Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01967 ATGTCAAACTCCATTACGGGTCAAAACCATTTTGAGAACCAAGAATTTGATGCTTATGGGTCTTGTATTAGAAGCAGTAACGCATTTCCTGAAGGCCTTGGAGTATTTCCCAGCATTCATTCAGTGGGAGACAGAATGTCAAGAACAGTGGAGCTTGTGCAAGCCCCTGTACTAGCAAAGGGCTCTGAGATCAGCCACACTAGACATCTGATGGATCTTCTTGGAGCAGCCAATGAAAACAATCACCAAACTCAAGGTCTCTCCCTTTCTTTAGGCTCTCACATGCTTGTCTCCTCCGAGGAATACAGGCAGCGATCCCTAAATCCAGGAATTATGAACCCCAATTATTTCATATCTGGAGAAGAGCCAAGAGAATCTTATAATCCAGGAATGGATCATTTAACCAGTGACTACTCTTTCACCAACAGTGCTTTTGCCTCATCTTCTGCCTCATTAAACCGTTCTGCTTCCACCTCTTATGGAACAGAATCTTTTGCTGCCATCATTGGGAACTCAAGATACTTGAAACCAGTTCAATCCCTTCTTGAAGAACTTGTTGATGTTGGTGGAAATGTGATTGACAGAGCCAATGAAAAATATGTGGGGAAGTTGTTTCACGGGAATAAAACAGGAGCTCGGAGACTCTCCGCCGAATTAAAATCAGAGTTGTGCAACAATGGCCATTTATTGGCTGAGAAACATGAACTTCAAGTCAAAGTTGCAAAGTTGATTGCCTTATTGGATGAGGTGGAGGGCAGATACGAGAAATACTATCATCAAATGGAAGACGTGGTGTCCTCCTTTGAAATGATAGCAGGTGTAGGAGCTGCCAAGTGTTATACTGGTTTAGCACTTCAAGCCATGTCTAGGCATTTCTGCAGCTTGAGAGATGCCATAATGTCACATATAAACGTGGAGAAAAAAAGACTCTTGCAAGATTTACCTAAAATCAGTAGCGGATTATCACAGCTAAGTTTATTTGACAGAGATAATAGACAAAGTAGAATGTCTCTCCAACAGTTTGGGTTGATTCAGAGTCAGCGGCAAGTGTGGAGACCCATTAGAGGGTTGCCAGAAACTTCTGTAGCAATCCTTCGTTCATGGCTCTTTGAACACTTTCTCCACCCTTATCCCAATGATTCTGAAAAGCTAATGCTGGCATCCCAAACTGGCTTGACCAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGGGTACGCCTTTGGAAACCAATGATAGAAGAGATGTACAAAGAAGAGTTTGGAGAGTCTTCAGAAGACTCCAACCCACCTGCTAGTGCTAATAACAACTACTTGGCGAGGGAAGATACTGCAGACACAGACCGAGTGGGGGATTG 1358 0.43 MSNSITGQNHFENQEFDAYGSCIRSSNAFPEGLGVFPSIHSVGDRMSRTVELVQAPVLAKGSEISHTRHLMDLLGAANENNHQTQGLSLSLGSHMLVSSEEYRQRSLNPGIMNPNYFISGEEPRESYNPGMDHLTSDYSFTNSAFASSSASLNRSASTSYGTESFAAIIGNSRYLKPVQSLLEELVDVGGNVIDRANEKYVGKLFHGNKTGARRLSAELKSELCNNGHLLAEKHELQVKVAKLIALLDEVEGRYEKYYHQMEDVVSSFEMIAGVGAAKCYTGLALQAMSRHFCSLRDAIMSHINVEKKRLLQDLPKISSGLSQLSLFDRDNRQSRMSLQQFGLIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPPASANNNYLAREDTADTDRVGD 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01967 452 Pfam Homeobox KN domain 368 407 IPR008422 GO:0003677|GO:0006355
Bva06g01967 452 MobiDBLite consensus disorder prediction 420 452 - -
Bva06g01967 452 SMART prehox3 163 301 IPR006563 -
Bva06g01967 452 SUPERFAMILY Homeodomain-like 357 418 IPR009057 -
Bva06g01967 452 Gene3D - 345 426 - -
Bva06g01967 452 SMART HOX_1 351 415 IPR001356 GO:0003677
Bva06g01967 452 MobiDBLite consensus disorder prediction 426 441 - -
Bva06g01967 452 CDD homeodomain 351 412 IPR001356 GO:0003677
Bva06g01967 452 Coils Coil 233 253 - -
Bva06g01967 452 Pfam Associated with HOX 169 300 IPR006563 -
Bva06g01967 452 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 429 - -
Bva06g01967 452 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 9 429 - -
Bva06g01967 452 ProSiteProfiles 'Homeobox' domain profile. 370 411 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01967 Bva-Chr6 13268201 13271744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01967 82 426 Homeobox Transcription Factor Family AT1G19700 42.308 3.13e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva06g01967 POX 5.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01967 - - gmx:100792161 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01967 06 13268201 13271744 Bva06g01967 06 13268201 13271744 ECH