Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01966 ATGTTGTCCGGGAGTTCTCTATTAGCTCATCACTACAGTGAATCTGTTGGAAGCCAAAATGAGATGAAGTTTATGTCAGCAATCACTATGCAGTCAATTGATGGGCATTCCAATGGCAATAATCCTTTAACAGGTGATCCAGCTTGCAACTCATTTATCGGAGATTCTCATGTTATTCCTAGGACGCAATTGGAACTTGTAGATAATGATCAAAACATACAGTGCCAGAGTTTATCTCTTAGCCTAGGGACACTTGTGTCTTCTACTGCATCTATCCCTCCGTTTCAGTACCAGTACTCCACCACCGGTCTCTCACCGCTAATGACTAATTGCTTTCCAAATTTCAAGGGGACTATGTCTCTTAAAGATGATGAGACCGGTCTACATCAGGATTTGAGAAGTGGTGACGTGGCATCTGTATCTTATGGTGGTTCTCAGAACACTATAAAAAAGGAGGCCTTCTACAATCCCCACTCTTCAGTCTACCTTAAAGAAGTCCTCTCTGATCCATGTCTGCATGGATCACCGGGTTTGGCTAACACTGTCCTAAACTCTCAATACCTTAAGGCAGCACAGGATTTGCTTCATGAAATAGTGAAGGTACGAAAGGCTCTGAAGCAACCTGGAttggaaaaacataaaagtttCCATGACATCGGATTAGATGGCTCCAAAGATGCTGATGGAAGATCTACCAGCCAATCTGTACAGGTGTCTTCAGACCCAAATGCTTCAACTAACAACTCCTCATGTGAACTCTCACCTGCAGAGAGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGTCCATGTTAGATGAGGTAGATAAAAGATATCGGCAGTATTGCCATGAGATGCAAATTGTGGTGTCGTCTTTCGACATGGTTGCTGGGTGTGGTGCAGCCGAACCATATACCGCTGTTGCTTTGCGAACAATTTCTCGCCACTTCCGGTGTTTGCGTGATGCTATCAGTGGGCAAATTCAAGTGACTCAAAGAAAGCTTGGGGAGCAAGAGGGAATACCTCGCCTCCGCTACGTTGACCAGCAGCTCAGACATCAAAAGGCCGTTCAGCAGCTTGGTGTAATGCGACAAGCTTGGAGACCTCAGAGGGGACTTCCAGAAAGCTCTGTGTCAATACTCCGTGCTTGGCTCTTTGAGCATTTCCTCCACCCTTACCCAAAGGATTCGGAGAAAATTATGCTGGCGAGGCAAGCAGGCTTGACCAGAAACCAGGTGGCAAACTGGTTCATTAATGCACGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAGTTTGGTAATTCTGAGATGAGCTGCAATCTTTCATCTGAAAATAGACCTAGAACACCTAGAGATGATGTGCAAATTTCTGATAATAAAGGGGAAGAGTCAGAGGACAATTTAATATCTGTTGATGGCGTCCAAGGAGGGCTGCTTAAAGGATCAAAACTGGACCATACTTGCACAAATGAAATGGATGATAGGGCTGTAAGGATGGGGATTCAAAGCAGTGGCAATGGAGAAAATGTCACAGAATCTGGAAGCATGAAATTGCGGGGTGAGCAAAGGTCTAATATGAAAAATGGTTTTTATTCAAGCGGACCCATCACAACCAACCAGAATGGTGATGGCTGCGTTATGGCTCCAACTCCGGCCACATATGATTTATCAGAGTTAGGTAGTTTTCCTGTGAGTGGTCATGTTTCCCTTGCTTTGGAGTTGCGAAATTGTGAAAATGATGGATTTGCCATGTCCGATGATGGCATCTATAAAAGACATAATCAGACATTGGCTTCTTCCCCTGAGAATGATTTACTGGATTATCATTTCTCAGACCAAGGAAAGCAACAACACAGTGTCCTTTCAACATCCCTGTGCATGCTCACAAGACAACCTAACAGGGAAAAGATCAAAACAAACAACCCAATGAATACAACAGTTTTACCTCTATGGAGTACTCTCCTCCTTCAGTG 1988 0.4366 MLSGSSLLAHHYSESVGSQNEMKFMSAITMQSIDGHSNGNNPLTGDPACNSFIGDSHVIPRTQLELVDNDQNIQCQSLSLSLGTLVSSTASIPPFQYQYSTTGLSPLMTNCFPNFKGTMSLKDDETGLHQDLRSGDVASVSYGGSQNTIKKEAFYNPHSSVYLKEVLSDPCLHGSPGLANTVLNSQYLKAAQDLLHEIVKVRKALKQPGLEKHKSFHDIGLDGSKDADGRSTSQSVQVSSDPNASTNNSSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHEMQIVVSSFDMVAGCGAAEPYTAVALRTISRHFRCLRDAISGQIQVTQRKLGEQEGIPRLRYVDQQLRHQKAVQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQAGLTRNQVANWFINARVRLWKPMVEEMYKEEFGNSEMSCNLSSENRPRTPRDDVQISDNKGEESEDNLISVDGVQGGLLKGSKLDHTCTNEMDDRAVRMGIQSSGNGENVTESGSMKLRGEQRSNMKNGFYSSGPITTNQNGDGCVMAPTPATYDLSELGSFPVSGHVSLALELRNCENDGFAMSDDGIYKRHNQTLASSPENDLLDYHFSDQGKQQHSVLSTSLCMLTRQPNREKIKTNNPMNTTVLPLWSTLLLQ 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01966 662 MobiDBLite consensus disorder prediction 215 257 - -
Bva06g01966 662 SMART HOX_1 367 431 IPR001356 GO:0003677
Bva06g01966 662 MobiDBLite consensus disorder prediction 227 256 - -
Bva06g01966 662 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Bva06g01966 662 SMART prehox3 176 326 IPR006563 -
Bva06g01966 662 Pfam Associated with HOX 182 325 IPR006563 -
Bva06g01966 662 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
Bva06g01966 662 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Bva06g01966 662 MobiDBLite consensus disorder prediction 451 469 - -
Bva06g01966 662 CDD homeodomain 367 428 IPR001356 GO:0003677
Bva06g01966 662 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 17 602 - -
Bva06g01966 662 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 602 - -
Bva06g01966 662 MobiDBLite consensus disorder prediction 440 469 - -
Bva06g01966 662 Gene3D - 364 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01966 Bva-Chr6 13262890 13268874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01966 76 449 Homeobox Transcription Factor Family AT1G19700 51.662 9.00e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva06g01966 POX 2.8e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01966 - - gmx:100791641 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01966 06 13262890 13268874 Bva06g01966 06 13262890 13268874 ECH