Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01958 ATGCTGAAATCAGGCATAGGAGGAATGGATCAGGAGAGGAAGCAGCTGAAGAAGCCAGCGCATGCTAGTTCCAGAAAGGGGTGTATGAGAGGGAAAGGAGGCCCTGAAAATGCCAGTTGCACCTACAAAGGTGTAAGACAGAGAACTTGGGGGAAATGGGTTGCTGAGATCCGTGAACCTAATCGTGGTGCTCGACTCTGGCTGGGGACATTTGAGACTTCCCATGAAGCTGCTCTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGATCTGAAGCCAAGCTCAATCTCCCTGAACTCTCTGTCAATGTGAATTCTCACTGTCCACCACCATCTTCTGCCATTGCTGGCCCCTGCACCCAGATTCCCCAAATGACAATCCAGAACCAGCATCAGCAGACTCTGCCTCATCAGCTTCAGCTTCAGCTACAACAAAACGTGCCACAAAGTCCAACTTGTTCTCTTGATAACACTCCAATCTCAATGGCTACTCACCAAGTTGGACCAATATATACGAGTGACTGTATCATGTCCGTTCCCTTCGAGACTAACACTACGATGCCAGCAATGGAAACCAGCTCCAAAACCACCCAAAACGAGGACATTGagcttcgtccattttgggggGCAATGAATGAGAGCCTCCCtttcttggatgattctatctGGGCAGAAGCCGCAATGTCTGTAGATTTACCTTTAATGGCCGAAGCTGGAATTTTCACTGCTGGGACTGGGAATTGCTTAGCAGAGCCAACTGCATTGGACACTCTTCACTCTCCTTGGTgcaatatgatatg 800 0.46 MLKSGIGGMDQERKQLKKPAHASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPELSVNVNSHCPPPSSAIAGPCTQIPQMTIQNQHQQTLPHQLQLQLQQNVPQSPTCSLDNTPISMATHQVGPIYTSDCIMSVPFETNTTMPAMETSSKTTQNEDIELRPFWGAMNESLPFLDDSIWAEAAMSVDLPLMAEAGIFTAGTGNCLAEPTALDTLHSPWCNMI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01958 266 MobiDBLite consensus disorder prediction 1 40 - -
Bva06g01958 266 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 4 244 - -
Bva06g01958 266 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Bva06g01958 266 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Bva06g01958 266 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Bva06g01958 266 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Bva06g01958 266 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Bva06g01958 266 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 244 - -
Bva06g01958 266 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Bva06g01958 266 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Bva06g01958 266 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01958 Bva-Chr6 13228348 13229148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01958 17 99 AP2-EREBP Transcription Factor Family AT1G75490 86.747 3.17e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g01958 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01958 - - gmx:100797850 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00867 10 6642450 6643220 Bva06g01958 06 13228348 13229148 BWGD
Bva06g01958 06 13228348 13229148 Bva06g01958 06 13228348 13229148 ECH