Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01947 ATGGCTCGAGGCAAGATTCAGATCAAGAGGATTGAGAATACGACCAACCGTCAAGTCACCTACTCCAAAAGACGAAATGGCCTCTTCAAAAAGGCCAACGAGCTCACCGTTCTCTGCGACGCAAAGGTTTCTATTATCATGTTCTCCAGCACTGGTAAGCTCCATGAGTACATTAGTCCGTCTGCTATGACAAAGGAGTTCTTTGATCAATACCAGAAGACTGTAGGGATTGATCTATGGAGTTCTCACTATGAGAATATGCAAGAGAACTTGAAGAAGCTAAGAGAGTTGAACAGAAATCTACACCGGGAGATTAGGCAGAGGATGGGTGACTGTTTGAATGATCTGAACATGGAAGACCTAAAGCTTCTGGAGGAAGAGATGGAACAGGCTGTCAAGGCTGTTCGTGAGCGTAAGTATAAGGTGATATCCAGTCAGATTGGCACCCAAAGGAAGAAGCTTAATAATGAGAAAGAAGTGCACAAGAGACTCCTACATGACTtgGATGCAAGAGCAGAAGATCCACGTTATGGATTGATAGACAATGTGGGAGCAGGGGAATACGATTCTGTGATTAATGGATTCTCCAACTTAGGCCCTCGCATATTTGCTTTAAGCCTACAGCCCAGCCATCCACCAAATCCTCATACTCATACTCATAGCGGAACAGGCTCAGATGTTACAACTTACCCCTTACTTTTCTA 704 0.4418 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSAMTKEFFDQYQKTVGIDLWSSHYENMQENLKKLRELNRNLHREIRQRMGDCLNDLNMEDLKLLEEEMEQAVKAVRERKYKVISSQIGTQRKKLNNEKEVHKRLLHDLDARAEDPRYGLIDNVGAGEYDSVINGFSNLGPRIFALSLQPSHPPNPHTHTHSGTGSDVTTYPLLF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01947 234 Coils Coil 77 107 - -
Bva06g01947 234 PANTHER APETALA3 1 231 - -
Bva06g01947 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Bva06g01947 234 Coils Coil 114 141 - -
Bva06g01947 234 Coils Coil 151 171 - -
Bva06g01947 234 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bva06g01947 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva06g01947 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva06g01947 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva06g01947 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva06g01947 234 Pfam K-box region 81 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01947 234 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bva06g01947 234 MobiDBLite consensus disorder prediction 208 227 - -
Bva06g01947 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva06g01947 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva06g01947 234 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Bva06g01947 234 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01947 234 MobiDBLite consensus disorder prediction 210 227 - -
Bva06g01947 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01947 Bva-Chr6 13173137 13175567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01947 1 233 MADS-box Gene Family AT3G54340 56.838 8.31e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva06g01947 K-box 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01947 K09264 - gmx:100809514 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01947 06 13173137 13175567 Bva06g01947 06 13173137 13175567 ECH