Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01925 ATGACGGCTTCCGTCGAAGAAAAGATTAGAACAGGAGGAGGAGGATTAGTTGTTGGGGGTCAAACTCAAACTCTTGTTGCGGAGATGAAACTCTTGAAAGAAATGCAGGATCAATCTGGGGTCCAAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCAGGGCCACTTGTGTCCTTGCCTCAGGTGGGCAGTCTTGTCTATTACTTCCCTCAGGGACACAGCGAGCAGGTGGCAGCTTCCACAAGAAGAACAGCGACATCGCAGGTTCCTAACTATCCGAATCTTCCATCTCAGTTGCTGTGCCAAGTTCACAATGTCACACTTCATGCAGACAAAGATACAGACGAAATCTACGCTCAGATGAGTCTCCAACCACTGAATAATGAAAAAAACGAAGTGTTTCCTATATCTGATTTTGGTGTGAAGCCAAGTAAACATCCAAGTGATTTTTTCTGCAAAACTTTGACTGCTAGTGACACTAGCACGCATGGCGGGTTTTCAGTACCACGCAGGGCAGCAGAAAAGCTCTTTCCTTCATTGGATTACACAATTCAACCCCCAACGCAAGAACTTCTTGTCCGAGACTTGCACGATAATAGCTGGACATTTCGGCATATATACCGTGGCCAGCCAAAGAGACACCTTCTCACGACAGGATGGAGTTTGTTTGTGGGCTCAAAAAGGCTTAAAGCAGGTGATGCTGTTCTTTTCATAAGGGATGAGAAGTCGCAATTGCTAGTTGGTGTTAGGCGTGCAAATCGTCAACAGACAACACTGCCTTCATCAGTTCTCAGTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGATCCCATTCACTATTTTCTACAATCCAAGGGCATGTCCTTCAGAATTTGTAATTCCATTAGGAAAATACAGAAAAGCTGTATTTGGGACTCAGCTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGACTTGGATCCTTTGAGGTGGCCTGGCTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGATGTGGGAATAAGCAGAATAGAGTTTGTTCGTGGGAAATTGAGACTCCTGAAAgtctttttatatttccttctttgaCTTCAACTTTCAAGCGACCATTACAACGTGGATTTTTGGAAAATGAGTGGGGAACATTGCAAAGAAGACCTTTTATGCGAGTTCCAGAAAATGGAAACGTGGAGCTCTCCAACTCTATATCAAATCTCTACTCGGAACAGGAACAGctaatgaatatgaatattcttttaaaatctcAACTTGGTAAAAATCCTGCAACAGTTTCATCACTCGTGCAACAAGAAACTGCTGCCATGAGAGACCCCCTGCAAGATGCGAATGCCACATTGGCAACAGATAGCCAAAAAGCTCATGTTGCTTGTTCAGAGAGTTCTCAATCATTACAAGACCAATGCAACGCCTTGAACTCGCATTCACTGTTGAAAAAAGATGAACTCCAAAGAGTGAATCCTCCTACTTCTGGAACAGTTATTAATAAGTCGAAAGTGCAATCCGAGGTTCCAGGCGATCATACGATTGAATTCCCTTCGATGGAAGCATGCAAtatggaaaaaattaattcaaaaattgtaaGTCCACAATGTCTGGCGAGCCAGTTGACAATCCAGAATCCATTGCTCTCCCAGTCTAGTCCGTGGAGCATGCAGCCGCCTCAGTTAGAATCATCCGTGTCTCAGTCACAAGTGGCTGATGTGGCACGCCGATACGATTCTGCCATTCTAAATGCCCTGTTTCCTCCCCAAGACATTGATGAATGGATGATGAATTCTTCTAGCCAATGTTACTCTGGGATAAACAGATTAACTGTCTCAGCTTTGCAAGAACAGTCTGTGCTTCTACCTCAACATGTTAATCCTCTTTCACCTTTGACAAACCAAGAAATGTGGGAGAGGAATATCAAGTTGCTACCTCAAGCAGACCAGCAAGGGCAATATGGCCTTCATTGTATATCTAGATCAAGCAATTTGAAGGATCTATCGGATGAGAGCAATAATCAAAGTGGAGTGTACTCTAGCGTTAATGTGGATGCTATTAACGCCGGAAGCACCGTGATTGATCCTTCTACTTCTAGTACCATTTTAGATGAATTTTGCGCGTTGAAGGATGCTGATTTTCAGAACCCATCAGATTGCATGGTGGGGAACTTGAGTTCGAGTCAGGATGTCCAGTCTCAGATAACTACAGCAAGTTTGGCGGAGTCACACGCCTTTTCTCTGCAAGACTTCCCTGACAACTCAGGTGGAACGTCGTCACgacatgtttattttgatgaagCCACTATTTTGCACAATAACTCATGGCAGCAAGTGCAAGTCCCCGCACCCATGCGAACCTATACCAAGGTTCAAAAGACAGGATCTGTTGGAAGATCAATTGATGTGACTACTTTTAAGAATTACGAGGAATTGATCTCTGCAATTGAACGCATGTTTGGTCTTGAGGGCCTGCTCAATGACACCAGAGGTTCGGGATGGAAATTGGTATATGTTGATTATGAGAACGATGTTCTTCTTGCTGGGGACGATCCTTGGGAGGAATTTGTTGGCTGTGTGCGCTGCATCAGAATATTATCACCTTCAGAAGTTCAGCATATGAGCGAAGAGGGAATGAAGCTTCTCAACAGGGCTGCGGTGCAAGGGATTAACGGTGGCTGCATTTG 2780 0.4345 MTASVEEKIRTGGGGLVVGGQTQTLVAEMKLLKEMQDQSGVQKSINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQVPNYPNLPSQLLCQVHNVTLHADKDTDEIYAQMSLQPLNNEKNEVFPISDFGVKPSKHPSDFFCKTLTASDTSTHGGFSVPRRAAEKLFPSLDYTIQPPTQELLVRDLHDNSWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRIPFTIFYNPRACPSEFVIPLGKYRKAVFGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGNKQNRVCSWEIETPESLFIFPSLTSTFKRPLQRGFLENEWGTLQRRPFMRVPENGNVELSNSISNLYSEQEQLMNMNILLKSQLGKNPATVSSLVQQETAAMRDPLQDANATLATDSQKAHVACSESSQSLQDQCNALNSHSLLKKDELQRVNPPTSGTVINKSKVQSEVPGDHTIEFPSMEACNMEKINSKIVSPQCLASQLTIQNPLLSQSSPWSMQPPQLESSVSQSQVADVARRYDSAILNALFPPQDIDEWMMNSSSQCYSGINRLTVSALQEQSVLLPQHVNPLSPLTNQEMWERNIKLLPQADQQGQYGLHCISRSSNLKDLSDESNNQSGVYSSVNVDAINAGSTVIDPSTSSTILDEFCALKDADFQNPSDCMVGNLSSSQDVQSQITTASLAESHAFSLQDFPDNSGGTSSRHVYFDEATILHNNSWQQVQVPAPMRTYTKVQKTGSVGRSIDVTTFKNYEELISAIERMFGLEGLLNDTRGSGWKLVYVDYENDVLLAGDDPWEEFVGCVRCIRILSPSEVQHMSEEGMKLLNRAAVQGINGGCI 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01925 926 SUPERFAMILY DNA-binding pseudobarrel domain 140 281 IPR015300 -
Bva06g01925 926 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 921 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva06g01925 926 Gene3D - 316 388 - -
Bva06g01925 926 CDD B3_DNA 151 252 IPR003340 GO:0003677
Bva06g01925 926 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677
Bva06g01925 926 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva06g01925 926 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677
Bva06g01925 926 PANTHER AUXIN RESPONSE FACTOR 5 32 921 - -
Bva06g01925 926 SUPERFAMILY CAD & PB1 domains 830 896 - -
Bva06g01925 926 Pfam AUX/IAA family 814 904 IPR033389 -
Bva06g01925 926 Gene3D - 814 906 - -
Bva06g01925 926 Gene3D - 150 253 IPR015300 -
Bva06g01925 926 ProSiteProfiles PB1 domain profile. 817 901 IPR000270 GO:0005515
Bva06g01925 926 SMART B3_2 152 254 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01925 Bva-Chr6 13070703 13075916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01925 24 921 B3 DNA Binding Superfamily AT1G19850 58.433 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva06g01925 AUX_IAA 1.6e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01925 K14486 - gmx:100790289 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01925 06 13070703 13075916 Bva06g01925 06 13070703 13075916 ECH