Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01883 ATGGTTACCACAACTGATCCCTCTTCTAACCATCACTCGCCGACTAGTGCTGGAATATCTGGGACTGGGGATAGCAATAGCCCTAAGTTCCCGCGAAAAAACCTACCGTCTCCCTGGGCTCAAGTTGTCCGAGGTGGTGAGCCGGAGTCGACATCGGGCATTCACCAATCGCCGCCGtcgtcatcttcttcttcctcatcgCTGACTACCTCTGTACCGGACCCGACGCCATCATCGGATTCATCACCGAAGGCAGCTACTGCTTCACCGCCGGTTGATGATTTGAATACTGCTGCTGCAGATACCTCTGATGGTAATAACGGCAATGCGGGTCGTACAAAGAAGCCTGCTTGGAACAAGCCCTCTAACGGCGTTGCTGAGGTTGGTCCTGTAATGGGGGCGGTTTCTTGGCCAGCTTTATCTGAATCCACCAAGGCTTCGGCTAAAACGTCTGCTGACTCGTCCTCGAAAACTGCCGCAGATGGATCACTCTCCAGTTCTCAGGGGCTTATTACATCACATTCACCTCAGAAACAAGCAACTAATAATGCGAAACCAAATTCCTCCAACTATACTAGACAAAGATCAGTGAAGCGAGGTGGTAGCAACAACATTGCCGCGGGTCCTGCACAGACCAGCTTCTCTAACCCTCCCCCGCCTCCCCCACCACCGCCTTTTCCTGTATTTCAGGTCCCTCTAAGTGGCTATGGTACTGTGGTACCAGGAGTTCCTGATAGTTCTACAAGAAACTGGGATGCAAGACCACTTGTTGGTAGCTTTGTGCCAGCTGTAAATGATCATAGGAGTTCCTCTCGGAGGGGCAACTTTGGCCACCATCCACGTGGAGATGGCCCCTATCATAACAATTACGGGGGGAGACGTGATCAGGATCGAGGAAACATGTACCAACAAAGGGTGCCTCCAAGGGGACTGGTAAGGCATCCACCTCCTAACACTGCTGCATTTGTGGCACCTCAGGTCGTGGGAGCACCCTATGCGAACCCCATAGGTTTTCCTGAATTCTATTACGTTCCAACACTGCCGTTGGAACCTTTCAGGGGCATGCCGTTCTTTACCCATGGCCATCCTCCAGCTATGATCTACTCTGTTGCAGAGCCTCCATTGGCAAATATGATAgtgaatcaaattgaatattacTTTAGTGAAGGAAATTTAGTCAAGGATGAATTTTTAAGGTCCAATATGGATGAGCAGGGTTGGGTTCCAGTTACTTTGATAGCAAACTTCCCTCGAGTTAAAAGTCTAACAAGCAGCATTCAGTTGATACTGGATTCATTGAGAACTTCCACTGTTGTGGAAGTGCAgGGTGACAAGCTGAGGAGGCGCAATGAATGGATCAAGTGGGTGCCCTCTGCTCGGCTTCGGACTGATTCAGGTTCACTATCCCCGGGAGGGTCAGGCTATAATAACCTAGCTGCTAATTTTCAAAAGATCACCCTGGAAGAAGCAACTAAAACTACGGAGCCTACCACAGAGGCCTTTACTGGAAGATTTCCAACAGAGTCTCAACTCCCAAATGGCGATGCCCCAAGGAACAGCAATTG 1565 0.4875 MVTTTDPSSNHHSPTSAGISGTGDSNSPKFPRKNLPSPWAQVVRGGEPESTSGIHQSPPSSSSSSSSLTTSVPDPTPSSDSSPKAATASPPVDDLNTAAADTSDGNNGNAGRTKKPAWNKPSNGVAEVGPVMGAVSWPALSESTKASAKTSADSSSKTAADGSLSSSQGLITSHSPQKQATNNAKPNSSNYTRQRSVKRGGSNNIAAGPAQTSFSNPPPPPPPPPFPVFQVPLSGYGTVVPGVPDSSTRNWDARPLVGSFVPAVNDHRSSSRRGNFGHHPRGDGPYHNNYGGRRDQDRGNMYQQRVPPRGLVRHPPPNTAAFVAPQVVGAPYANPIGFPEFYYVPTLPLEPFRGMPFFTHGHPPAMIYSVAEPPLANMIVNQIEYYFSEGNLVKDEFLRSNMDEQGWVPVTLIANFPRVKSLTSSIQLILDSLRTSTVVEVQGDKLRRRNEWIKWVPSARLRTDSGSLSPGGSGYNNLAANFQKITLEEATKTTEPTTEAFTGRFPTESQLPNGDAPRNSN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01883 521 Pfam La domain 379 434 IPR006630 -
Bva06g01883 521 SMART la 373 451 IPR006630 -
Bva06g01883 521 SUPERFAMILY "Winged helix" DNA-binding domain 366 457 IPR036390 -
Bva06g01883 521 MobiDBLite consensus disorder prediction 264 301 - -
Bva06g01883 521 MobiDBLite consensus disorder prediction 1 230 - -
Bva06g01883 521 Gene3D - 368 459 IPR036388 -
Bva06g01883 521 ProSiteProfiles La-type HTH domain profile. 369 458 IPR006630 -
Bva06g01883 521 PANTHER LUPUS LA PROTEIN-RELATED 27 497 IPR045180 -
Bva06g01883 521 MobiDBLite consensus disorder prediction 99 113 - -
Bva06g01883 521 PANTHER LA-RELATED PROTEIN 1B 27 497 - -
Bva06g01883 521 MobiDBLite consensus disorder prediction 213 230 - -
Bva06g01883 521 MobiDBLite consensus disorder prediction 1 32 - -
Bva06g01883 521 MobiDBLite consensus disorder prediction 140 212 - -
Bva06g01883 521 MobiDBLite consensus disorder prediction 50 86 - -
Bva06g01883 521 CDD LAM 377 449 - -
Bva06g01883 521 MobiDBLite consensus disorder prediction 492 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01883 Bva-Chr6 12870604 12871155 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01883 K18757 - gmx:100785504 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00950 10 7079367 7083422 Bva06g01883 06 12870604 12871155 BWGD
Bva06g01883 06 12870604 12871155 Bva06g01883 06 12870604 12871155 ECH