Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01877 ATGCTTGATTCAGTTCTCCTGGCACTTTTCTTGCCATGTATTGGCATGAGCGCCGTCTTCATAGTCTACATGTGCCTTCTCTGGTACGCCGCGGCCCACCAGCCCGATGTTACGGTACCGGCGAAATCACTTTCTCAGAAAGGCCTGTCCCCTTCGGAGCTGGAGAAATTACCCAAAATCACCGGAAAAGAACTGGTCATGGGCACTGAATGCGCCGTCTGCCTCGACGAGATCGAGAACGAGCAACCGGCTCGACTGGTTCCTGGTTGCAACCATGGGTTCCATTTGGAATGCGCTGACACTTGGCTTTCCAAGAATCCCCTCTGTCCGGTTTGTAGAGCCAAGCTTGATACTGAGCTTCTCAGTTCATCTGAAAATCCGTGCTA 386 0.5233 MLDSVLLALFLPCIGMSAVFIVYMCLLWYAAAHQPDVTVPAKSLSQKGLSPSELEKLPKITGKELVMGTECAVCLDEIENEQPARLVPGCNHGFHLECADTWLSKNPLCPVCRAKLDTELLSSSENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01877 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
Bva06g01877 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Bva06g01877 128 SUPERFAMILY RING/U-box 70 118 - -
Bva06g01877 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Bva06g01877 128 SMART ring_2 71 112 IPR001841 -
Bva06g01877 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Bva06g01877 128 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01877 Bva-Chr6 12842942 12844152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01877 1 128 C3H Transcription Factor Family AT5G42200 52.206 2.89e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01877 K19037 - gmx:100817919 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00960 10 7121856 7122242 Bva06g01877 06 12842942 12844152 BWGD
Bva06g01877 06 12842942 12844152 Bva06g01877 06 12842942 12844152 ECH