Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01873 ATGGGACTGGCGTTCATTAAGGGGTTGTGCTGCGGTACCGAAACCCATGAAATTCGAATTATGTCCACAGATTCCTCCTCTGGTATGCAGAGCGAAGCCCAGTATGAGTTCAAACCAAGTCGTCCTCCTCGTCCTCACAAGGCTACCCAATCTTCTTGGCAGATAGGTCCAGTTCTGGGAAAGCCCTATATTGAcataaatttgatttacaaAATCGAAAAAGAATTGGGAAGAGGGCAGTCTGGGGTGACTTATCTATGCACCGAGAAGTCGACAGGGAGGAAGTATGCTTGCAAGTCGATAGCGAGGGGGAAGCTGGTGAAAAAGGAAGACATGGAAGACGTTAGAAGAGAAGTTCTTATTCTGCAGGATCTTTCAGGTCAACCCAATATTGTGGAATTCAGAGGAGCTTATGAGGACAGGCAGCACGTGCACTTGGTGATGGAGTTGTGTAGCGGCGGCGAGCTGTTCGACCGTATAATTGCCAGAAGGAATTACTCGGAGCGCGAAGCAGCAATACTCTTCAGGCAGATTGTGAATGTGGTTAATGTTTGCCATTTCATGGGTGTCATGCATCGTGACCTTAAGCCTGAGAATTTCTTGTTTGCCAGCAAGGATCCCAATGCCGCCATTAAAGCTACGGATTTTGGACTCTCCGTCTTCGTTCAGCCAGATAAAGTGTACAGGGACATTGTTGGTACTGCCTACTATGTTGCTCCGGAAGTTTTAAACCGAAATTACGGAAAGGAGATGGATGTCTGGAGTGCGGGGGTTATTTTATACATCCTCCTATGTGGACTGCCTCCATTTTGGGGAGAGACGGAAAAAGGCATCTTTGAAGCTATTTTGGAGGGCAACTATGATTTTCAAAGCCAACCGTGGCCTTCTATTTCAGCTGCTGCAAAGGATCTGATCAGGAAAATGTTGACTTATGACCCTAAGAAGCGCATTACAGCAGCTGAAGCTCTTGAACACCCATGGATGAAGGAAGGTGGTGAAGCGTCTGACAAGCCTATAGACAGTGCTGTATTTAAAAGGATGAAACAATTTAGGGCAATGAACAAGATGAAGAAGCTTGCTCTAAAGGTAATAGCAGAGAGCCTTTCAGCAGAAGAAATACAGGGTTTGAAACAAACGTTCAACAGTATGGACACAGATGGCAGTGGTACTATCACATTTGAAGAACTCAAAACTGGATTGTCCCGACTGGGATCTAAGCttagtgaaaatgaaataaagcaGCTGATGGAAGCAgCTGATGTTGACAGGAGTGGGTCCATTGATTATATTGAATTCATTACTGCAACTATGCATCGGCATAGACTTGAGAGGGAAGAGAACTTGTTTAAAGCTTTCCGATACTTTGACAAAGATGACAGCGGTTTTATAACAAGAGATGAGCTTCGACAAGCTATGACTGAATACGGAATGGGTGATGATGCAACCATAGATGAAGTTATCAATGATGTTGATACTGATAGAGATGGAAGAATTAATTACGAAGAGTTTGTGGCTATGATGAGAAAGGGGATGCATGAACATGATGGTGATGAGAAACAGAAATG 1565 0.4358 MGLAFIKGLCCGTETHEIRIMSTDSSSGMQSEAQYEFKPSRPPRPHKATQSSWQIGPVLGKPYIDINLIYKIEKELGRGQSGVTYLCTEKSTGRKYACKSIARGKLVKKEDMEDVRREVLILQDLSGQPNIVEFRGAYEDRQHVHLVMELCSGGELFDRIIARRNYSEREAAILFRQIVNVVNVCHFMGVMHRDLKPENFLFASKDPNAAIKATDFGLSVFVQPDKVYRDIVGTAYYVAPEVLNRNYGKEMDVWSAGVILYILLCGLPPFWGETEKGIFEAILEGNYDFQSQPWPSISAAAKDLIRKMLTYDPKKRITAAEALEHPWMKEGGEASDKPIDSAVFKRMKQFRAMNKMKKLALKVIAESLSAEEIQGLKQTFNSMDTDGSGTITFEELKTGLSRLGSKLSENEIKQLMEAADVDRSGSIDYIEFITATMHRHRLEREENLFKAFRYFDKDDSGFITRDELRQAMTEYGMGDDATIDEVINDVDTDRDGRINYEEFVAMMRKGMHEHDGDEKQK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01873 521 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Bva06g01873 521 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g01873 521 Pfam EF-hand domain pair 376 436 IPR002048 GO:0005509
Bva06g01873 521 Pfam EF-hand domain pair 445 508 IPR002048 GO:0005509
Bva06g01873 521 Gene3D - 336 516 - -
Bva06g01873 521 SMART efh_1 447 475 IPR002048 GO:0005509
Bva06g01873 521 SMART efh_1 482 510 IPR002048 GO:0005509
Bva06g01873 521 SMART efh_1 375 403 IPR002048 GO:0005509
Bva06g01873 521 SMART efh_1 411 439 IPR002048 GO:0005509
Bva06g01873 521 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Bva06g01873 521 SUPERFAMILY EF-hand 368 508 IPR011992 -
Bva06g01873 521 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Bva06g01873 521 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Bva06g01873 521 Gene3D Phosphorylase Kinase; domain 1 71 155 - -
Bva06g01873 521 Gene3D Transferase(Phosphotransferase) domain 1 156 335 - -
Bva06g01873 521 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Bva06g01873 521 Pfam Protein kinase domain 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g01873 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Bva06g01873 521 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Bva06g01873 521 SUPERFAMILY Protein kinase-like (PK-like) 70 336 IPR011009 -
Bva06g01873 521 CDD STKc_CAMK 70 327 - -
Bva06g01873 521 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Bva06g01873 521 ProSiteProfiles EF-hand calcium-binding domain profile. 479 513 IPR002048 GO:0005509
Bva06g01873 521 MobiDBLite consensus disorder prediction 23 51 - -
Bva06g01873 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 514 - -
Bva06g01873 521 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 33 514 - -
Bva06g01873 521 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g01873 521 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01873 Bva-Chr6 12824203 12827739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01873 45 510 EF-hand Containing Proteins AT3G20410 72.103 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva06g01873 Pkinase 9.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01873 K13412 - mnt:21397461 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01873 06 12824203 12827739 Bva06g01873 06 12824203 12827739 ECH