Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01864 ATGTCGTCACTGGCCAAAAATAAGGACTGGAATGGCGGGGAGACCAAGCATTACCCTTCCCCCCTTGCCTCTCACGAGAACGTGGTCAGCGACCCTACAGTTTTCTGGGACACTCTCAGGCGCTTTCACTTTGTTATGGGCACCAAATTTATGATTCCTGTAATCGGGGGAAAGGAACTGGATTTGCATGTTCTTTACGTGGAAGTTACTAAAAGAAGTGGCTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGTAATATATTCAGGTTCTCTCCTACAACTACAAGTGCTTCTTTTGTATTGAGGAAACACTACTTTAGTCTTCTTTACCATTACGAGCAAGTTTACTTCTTCAAGGTTCGGGGCCCTGTGTATTCTCCCTCAGATGCATTTTCTGTTGGCAACCAGTCTTGGAGACCTGAATTAGCTATTGTGGAATATTCGCCTAAGCCTTTGATTGAGCAACCTGATTCCCAAAACGGAGATACTTCGTGCTTTTCTGTAATTGGAACGATCGAGGGGAAATTTGATTGTGGTTACATGGTGTCTGTAAAACTGGGTTCGGAGGTTCTTAGAGGCGTGCTTTACCATCCGGAGCAATCAGATCCCTCTACATCATTATCACAATATAGTAATAGTAATGCCATTGTACCGTACAATGGCAAAAGTCGCCGTAGGCGGAggagaaacaaaagaagaggggACCCGAACTACCCGAAGCCAAATAGGAGTGGctataactttttctttgctGAAAAACATTACAAGCTCAAAGCACTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAATCATGGAACAGTCTTAGCCCAGAGGAGAGAATGGTTTACCAGAACATTGGCTTGAGAGACAAGGAAAGGTACAGGAGAGAATTGAGGGAGTACAAAGAGAGAATGAAGCCTAGGCCGACCATAGAACCTGGCCACTG 968 0.4318 MSSLAKNKDWNGGETKHYPSPLASHENVVSDPTVFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTKRSGYEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFKVRGPVYSPSDAFSVGNQSWRPELAIVEYSPKPLIEQPDSQNGDTSCFSVIGTIEGKFDCGYMVSVKLGSEVLRGVLYHPEQSDPSTSLSQYSNSNAIVPYNGKSRRRRRRNKRRGDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYRRELREYKERMKPRPTIEPGH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01864 322 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bva06g01864 322 CDD HMGB-UBF_HMG-box 242 306 - -
Bva06g01864 322 SUPERFAMILY HMG-box 239 312 IPR036910 -
Bva06g01864 322 Gene3D High mobility group box domain 225 318 IPR036910 -
Bva06g01864 322 SMART bright_3 30 121 IPR001606 GO:0003677
Bva06g01864 322 SMART ARID_2 26 116 - -
Bva06g01864 322 Gene3D - 22 125 IPR036431 GO:0003677
Bva06g01864 322 Pfam HMG (high mobility group) box 242 309 IPR009071 -
Bva06g01864 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 315 - -
Bva06g01864 322 SUPERFAMILY ARID-like 25 123 IPR036431 GO:0003677
Bva06g01864 322 SMART hmgende2 241 310 IPR009071 -
Bva06g01864 322 MobiDBLite consensus disorder prediction 205 222 - -
Bva06g01864 322 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bva06g01864 322 MobiDBLite consensus disorder prediction 1 22 - -
Bva06g01864 322 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Bva06g01864 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
Bva06g01864 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 315 - -
Bva06g01864 322 MobiDBLite consensus disorder prediction 205 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01864 Bva-Chr6 12777567 12779554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01864 13 315 ARID Transcription Factor Family AT1G76110 66.026 2.05e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva06g01864 ARID 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01864 - - jre:108984522 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01864 06 12777567 12779554 Bva06g01864 06 12777567 12779554 ECH