Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01853 ATGGCTTTCGCTACCAACGCTTTACTTTCTTCAAACTTTTTGGGAAGTAAGGTTCTACTTTCTCCTCCAACCCCCAAAACAAGTAAATCATCGGTTGCTCTGCCATTCTTTTTCAAGAGAAGCTTTATAAATGCTCACAACATTTTCAACAGAAAGCCTAATTCTGAAGGATTCAAATCCCAAGCAACTTTAGCTGCCTTAATCTTCTCTTCTATCACCCCTCAAGCTCTAGCCGCAGACAACGTTTCCCCGTCAATACCTCCCCCTGTAATTGAAGCTCAACCCACCAAACCCAGTTCCACAAATTCCTCACCCTTCTCTCAGAACCTCCTTCTAACAGCCCCAAAACCCCAAGCTCAGACAACTTCTGATCTCCCCGAAGGTAGCCAATGGCGTTACAGCGAGTTTTTGAATGCAGTGAAGAAGGGCAAGGTCGAGAGAGTCAGGTTCAGTAAAGACGGTTCTGCCCTTCAACTCACCGCCATCGATGGCCGCCGAGCCACAGTCGTTGCACCCAACGACCCGGACCTTATCGACATTTTAGCTATGAACGGTGTCGATATCTCGGTCTCAGAAGGCGATTCGGGTAATgggttgtttaattttattggcaATTTGCTATTCCCATTCCTTGCATTTGCCGGATTGTTCTTACTGTTCCGCCGAGCCCAAGGCGGACCTGGCGGCCCTGGTGGACTTGGCGGACCCATGGATTTCGGAAGATCAAAGTCGAAATTCCAAGAAGTTCCGGAAACGGGTGTAACTTTCGGTGATGTGGCCGGAGCTGACCAAGCCAAATTGGAATTGCAAGAAGTTGTTGATTTCCTGAAAAACCCAGATAAGTACACAGCGCTGGGTGCTAAGATTCCCAAAGGATGCCTTCTAGTAGGACCACCGGGTACTGGGAAGACTCTTTTGGCCAGAGCAGTGGCCGGGGAGGCTGGAGTGCCATTCTTTTCCTGTGCAGCTTCTGAATTTGTGGAATTGTTTGTGGGAGTTGGTGCATCTAGAGTGCGGGATTTGTTTGATAAAGCAAAATCAAAGGCTCCGTGCATTGTATTTATAGATGAGATTGATGCAGTAGGAAGGCAGAGAGGGGCGGGTCTAGGAGGAGGCAATGATGAAAGGGAACAGACTATTAACCAGCTTTTGACGGAGATGGATGGATTTTCTGGCAATTCTGGTGTCATTGTTTTGGCTGCAACTAACAGACCAGACGTTCTTGATTCAGCATTGCTTAGACCGGGGAGGTTCGACAGACAAGTTACTGTAGACAGACCTGATGTTGCGGGTAGAGTTAAAATTCTTCAGGTTCATTCTAGAGGAAAAGCACTAGCAAAAGATGTggactttgaaaaaattgCAAGAAGAACCCCAGGATTCACGGGAGCTGATTTACAAAATCTGATGAACGAAGCAGCAATACTTGCAGCCAGGCGAGACCTTAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGAATTATTGCTggaccagaaaagaaaaatgctgtAGTCTCAgatgagaagaagaaattagtcGCCTATCATGAGGCTGGTCATGCTTTAGTAGGAGCATTGATGCCCGAATATGATCCTGTAGCCAAGATATCAATCATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAATCTGGATTGTACAGCAGAAGCTACTTGGAAAATCAGATGGCAGTTGCTTTGGGTGGAAGGGTTGCTGAAGAGGTCATTTTTGGCCAGGAGAATGTCACAACTGGAGCTTCAAATGACTTTATGCAAGTTTCACGGGTGGCAAGGCAGATGGTGGAGAGATTTGGATTCAGCAAGAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCGTTCTTGGGCCAACAGGTGTCAACACAGAAAGATTATTCCATGGCTACTGCTGATGTAGTGGATGCAGAGGTTAGAGAGCTGGTAGAAAGAGCCTATGCAAGAGCAAAGCAAATTATTACAACCCACACTGACATCCTTCACAAGCTTGCCCAGCTTCTCATAGAGAAAGAGACCGTAGATGGTGAAGAATTCATGAGCCTATTCATTGACGGAAAAGCCGAATTGTATATCGCGTA 2135 0.4492 MAFATNALLSSNFLGSKVLLSPPTPKTSKSSVALPFFFKRSFINAHNIFNRKPNSEGFKSQATLAALIFSSITPQALAADNVSPSIPPPVIEAQPTKPSSTNSSPFSQNLLLTAPKPQAQTTSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAIDGRRATVVAPNDPDLIDILAMNGVDISVSEGDSGNGLFNFIGNLLFPFLAFAGLFLLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFDKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQVSTQKDYSMATADVVDAEVRELVERAYARAKQIITTHTDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYIA 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01853 711 MobiDBLite consensus disorder prediction 88 109 - -
Bva06g01853 711 Gene3D - 126 196 - -
Bva06g01853 711 ProSitePatterns AAA-protein family signature. 396 414 IPR003960 GO:0005524|GO:0016887
Bva06g01853 711 Pfam Peptidase family M41 507 700 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bva06g01853 711 PANTHER METALLOPROTEASE M41 FTSH 55 703 - -
Bva06g01853 711 SUPERFAMILY FtsH protease domain-like 507 701 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bva06g01853 711 MobiDBLite consensus disorder prediction 95 109 - -
Bva06g01853 711 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 55 703 - -
Bva06g01853 711 Pfam AAA+ lid domain 448 491 IPR041569 -
Bva06g01853 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 497 IPR027417 -
Bva06g01853 711 SMART AAA_5 289 428 IPR003593 -
Bva06g01853 711 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 200 700 IPR005936 GO:0004176|GO:0004222|GO:0016020
Bva06g01853 711 Pfam ATPase family associated with various cellular activities (AAA) 294 425 IPR003959 GO:0005524|GO:0016887
Bva06g01853 711 CDD AAA 260 425 - -
Bva06g01853 711 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 40 711 IPR005936 GO:0004176|GO:0004222|GO:0016020
Bva06g01853 711 Gene3D Peptidase M41 503 706 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bva06g01853 711 Gene3D - 427 502 - -
Bva06g01853 711 Gene3D - 244 426 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01853 Bva-Chr6 12716665 12719534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01853 249 702 Miscellaneous Gene Families AT5G53170 49.670 1.60e-136 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01853 K03798 - csv:101221159 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01027 10 7483870 7486530 Bva06g01853 06 12716665 12719534 BWGD
Bva06g01853 06 12716665 12719534 Bva06g01853 06 12716665 12719534 ECH