Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01838 ATGGATGGAGAAAGagatgaaggaaaagaaggagGTCAAACAGTAGAGGGAGGAAATGAGTTGAATGCGAAAATTGCTTTGGTGGAACAAGTGCAGGGTGTGATAGAAGCGGTGGCTCAATTTGGGGATTACAGATTGACCCAAAGGAAAGAATGCCATACCCTCGTTAGGCGTTTGAAACTATTGTTGCCTCTTATTGAAGAAATTCGTGAACTCGATTCACCAATTCCAGAGAATGGCATGACGTGGTTGTGTAATATGAAGGATACGCTACTTATTACCAAGAAATTGTTGCAATTATGTAGCGAGGGGAGCAAGATTTATCTGGCACTCGAGAACGAGGCGGTTATGATCAAATTTCGGTCCGTCTATGAAGAATTGAGCAAAGTACTTGATGCTTCTCCATGGGAAGAGCTAGGGATCTCAGACGAAGTGAAAGAACAGCTTGAGCTAATGTGCGTGCAACTCAGGCGGGCAAAGAGGCGAACGGATACACAGGACATTGAACTTGCAATGGATATGATGGTGGTATTTTCTAAAAAGGATGATCGGAACGCTGACAGTGCCATCATAGAAAGGCTAGCTAAAAAGATGGAACTTTATACTGTTGAGCATCTTAAGATAGAAACGGTGGCTGTAAAGAAGCTTgctgaagaaagaaatgggCAAAATGCGGAGAGTACCCAGCAAATAATTTGCCTTCTTAACAAATTCAGAGGGATTGCGGGCATGGAAGAAACTAATGTTATAGATGATCCTGTCATGCCCAGAACGCTCGAGAAGTGCACATCTTTGGTCATCCCTCACGAATTTCTCTGCCCAATTACACTAGAAATAATGACAGATCCTGTTATTGTTGCAAGTGGACAGACTTATGAAAGGGAAAGCATAGAGAAGTGGTTCGCGTCCAATCACAGGACGTGCCCAAAGACTAGGCAAACTCTGGAGCATCTGTCATTAGCACCAAACTATGCCCTGAAAAATCTGATCTCCCAGTGGTGTGAGAAAAACAACTTTCAGCTTGCTAAGAAAGACACTTGTTCAGATCAGGAAAGCTGTTCCATCGAAAAAAAAGAGGAACTAGCGTCTTTGGTTGAGGATCTATCGTCTATTCATTTGGAAGTGCAAAGGAAGGCAGTGAAGACGATTCGTCTGATATGCAAGGAGAATTCTGAGAAGAGAGTGTTGATTGCTGAGCATGGAGGAATACCGCCATTAGTGCAACTCCTCTCATATCCAGATTCCACAATACAGGCTCATGCGGTGACTGCTCTTTTGAATTTATCTATTGATGAGACTAACAAGCGACTCATATCTAGAGAAGGGGCTATTCCTGCTATAATAGAAGTATTGAAGAATGGGAGTACCGAGGGTAGAGAAAATTCTGCAGCTGCTTTATTTAGCTTGTCAATGCTGGACgagaataaagaaattgtGGGTTTATCAAATGGCATCCCACCACTGGTAGAATTGTTACGGGAAGGGACAATCAGAGGTAAAAAAGATGCTGCTACAGCTCTCTTTAACTTATCTCTCAACCACGCAAATAAGAAAAGGGCCATTGAAGCCGGTATTGTGACACCATTGCTTCATTTGCTCAAGGATAAAAACTTGGGCATGATTGACGAAGCCCTTTCCATCCTATTACTCCTTGCTTCTAGTCCAGACGGAAGGCGCGAGATTGGACAACTTACCTTCATTGAAAATCTTGTTGATTTCACGAGGGATGGAACCCCCAAGAATAAGGAATGCGCAGCATCTGTTCTTCTTGAGTTGGCTTCCAGTAATTCATCCTTTATACTCGCAGCACTTCAGTTTGGAGTATACGAGCATTTAATTGAGATCAAAGAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAAGGCACTCTTAGATCTCATAAGCAAGAGCGAGCAAATTTA 1922 0.4168 MDGERDEGKEGGQTVEGGNELNAKIALVEQVQGVIEAVAQFGDYRLTQRKECHTLVRRLKLLLPLIEEIRELDSPIPENGMTWLCNMKDTLLITKKLLQLCSEGSKIYLALENEAVMIKFRSVYEELSKVLDASPWEELGISDEVKEQLELMCVQLRRAKRRTDTQDIELAMDMMVVFSKKDDRNADSAIIERLAKKMELYTVEHLKIETVAVKKLAEERNGQNAESTQQIICLLNKFRGIAGMEETNVIDDPVMPRTLEKCTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFASNHRTCPKTRQTLEHLSLAPNYALKNLISQWCEKNNFQLAKKDTCSDQESCSIEKKEELASLVEDLSSIHLEVQRKAVKTIRLICKENSEKRVLIAEHGGIPPLVQLLSYPDSTIQAHAVTALLNLSIDETNKRLISREGAIPAIIEVLKNGSTEGRENSAAALFSLSMLDENKEIVGLSNGIPPLVELLREGTIRGKKDAATALFNLSLNHANKKRAIEAGIVTPLLHLLKDKNLGMIDEALSILLLLASSPDGRREIGQLTFIENLVDFTRDGTPKNKECAASVLLELASSNSSFILAALQFGVYEHLIEIKESGTNRAQRKAKALLDLISKSEQI 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01838 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Bva06g01838 640 Pfam U-box domain 267 337 IPR003613 GO:0004842|GO:0016567
Bva06g01838 640 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Bva06g01838 640 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Bva06g01838 640 Gene3D - 22 133 IPR036537 GO:0007166
Bva06g01838 640 CDD RING-Ubox_PUB 271 313 IPR045210 -
Bva06g01838 640 SUPERFAMILY RING/U-box 266 340 - -
Bva06g01838 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 342 IPR013083 -
Bva06g01838 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 483 525 IPR000225 GO:0005515
Bva06g01838 640 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 20 638 - -
Bva06g01838 640 SMART arm_5 554 594 IPR000225 GO:0005515
Bva06g01838 640 SMART arm_5 513 553 IPR000225 GO:0005515
Bva06g01838 640 SMART arm_5 472 512 IPR000225 GO:0005515
Bva06g01838 640 SMART arm_5 431 471 IPR000225 GO:0005515
Bva06g01838 640 SMART arm_5 390 430 IPR000225 GO:0005515
Bva06g01838 640 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842|GO:0016567
Bva06g01838 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Bva06g01838 640 Gene3D - 434 639 IPR011989 -
Bva06g01838 640 SUPERFAMILY ARM repeat 361 634 IPR016024 -
Bva06g01838 640 Gene3D - 345 433 IPR011989 -
Bva06g01838 640 PANTHER U BOX DOMAIN-CONTAINING 20 638 - -
Bva06g01838 640 SMART Ubox_2 270 333 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01838 Bva-Chr6 12651304 12654040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01838 26 640 U-box Gene Family AT5G42340 65.203 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01838 - - cpap:110818093 894.419