Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01816 ATGGCATACCCGCCGATTCAGGGTCCAAGTCCAGGATCGACTTCAAGTTCCGGCTTTCAATTATTGAACTCTCCTTTTGGTGATACCACTTATACCAAAGTCTTTGTTGGGGGTTTGGCGTGGGAAACTCAGAGCGAGACTTTGCGACGCTACTTCGAGCAGTTTGGCGAGATTCTGGAGGCCGTTGTAATCACTGATAAGAATACCGGGCGATCCAAAGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCCTGCGTTGATCCAACTCCAATTATTGATGGTAGGAGGGCAAATTGTAACCTGGCTTCACTTGGGCGCCCACGGCCTGCTCTATCTTATGGACGTTTGAGACCTGCCTCCCCTTACATTGGAAGTTTGCATCGAGGCGCTTACATTGGAAATTTTGGCTATCAGCAGCCACTTCCTTACAGCTATCAACAAGGCTTGGCTTATCCTCCTTATGGGTATACGACATATGGGCCTGAATACATCTACCCGCAGGGTTTGTATAATCCATATATGGGTCAGCAGTATCTTCAGATATATGGAGTGCCTGGGACTGTGAATACAACTCTTTATCCTTACGGGCAAATAAGCCAAGCTATTCCTAGTGGTCACTCTTATACTGCAATGCAGGGTTATGCCGTACCTGGTCATCAGATTGTACCCTTTGGTGGATCCAATGTCAATGCTATGACAACTTCACCTATGCCTGCCATTCAAGCACCATATCCTAGTGGAGTTGCTGCACCCGTTCCAGGCCAACCACAATTCATTGTTCCTGCCCCTTCTTCGCAGTTTATGCAAGTGGCGGGCTTCCAAACTAGCCTTgcaagatatttattttgcattctAGAGGTCATATATAGTCATGCTCATCAAGTTGTGTCTGAGTCGCTCCGGATGGGGTTGGAGAAGAAAAGTGGAAGATGCAGGGGCTGCTTCCCAATTTGGACGATTATGCAGTGTATCTATCATATCATACTACTAGTACTCAGGAAGAGTGGTGGTAGTATTGATTGTATTGGATCTACGGGTGCTGAAATAGGTTTTTGGCATCCATGTAGAAATACGTTTAAGTCAgtagtattaaaaaagaaagatcgTGTCCGAATCAaaatatg 1139 0.4495 MAYPPIQGPSPGSTSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETLRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRPRPALSYGRLRPASPYIGSLHRGAYIGNFGYQQPLPYSYQQGLAYPPYGYTTYGPEYIYPQGLYNPYMGQQYLQIYGVPGTVNTTLYPYGQISQAIPSGHSYTAMQGYAVPGHQIVPFGGSNVNAMTTSPMPAIQAPYPSGVAAPVPGQPQFIVPAPSSQFMQVAGFQTSLARYLFCILEVIYSHAHQVVSESLRMGLEKKSGRCRGCFPIWTIMQCIYHIILLVLRKSGGSIDCIGSTGAEIGFWHPCRNTFKSVVLKKKDRVRIKI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01816 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Bva06g01816 379 Gene3D - 8 121 IPR012677 -
Bva06g01816 379 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Bva06g01816 379 CDD RRM_RBM24_RBM38_like 32 107 - -
Bva06g01816 379 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 280 - -
Bva06g01816 379 SMART rrm1_1 33 105 IPR000504 GO:0003723
Bva06g01816 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 89 IPR000504 GO:0003723
Bva06g01816 379 PANTHER BOULE-RELATED 1 280 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01816 Bva-Chr6 12546397 12551270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01816 21 108 C2H2 Transcription Factor Family AT2G19380 44.318 1.71e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01816 - - aprc:113864528 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01816 06 12546397 12551270 Bva06g01816 06 12546397 12551270 ECH