Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01810 ATGCCAGCACCGAAAAGGCAACGCAAATGGAGTTTGTTACACGTTAAGGAGAAGAGGTGGGATTTGTTGAAGAAGAAAcgaaaatcaaaagaaagagaagagggaTGGATGCGCAGATTTAGATCTGTTTCTGTTTTGTTGAATTACAGCTTGAATTTGCTTTTGGATGGACTTTTTCGATCTGAATTAACCACTTTGTTACATAACAAGATtgcaaaaatggaaaaagttGCTGCACAAGTAGCTGCTCCCATTTTCATACACCAGACGCTCTCTAGTCGATTTTGTGAGACGCCTGCCATGGCCAAGAAGCGCGATTTTACATACGCAACTTCGCCCAATTTTCTTCACCGACAATTACAAAACCCTAACGACAACTGGAACCCCAAGGGCTGGGACTGGGACAGTGCGAGATTCGTAGGTAAACCCTTGGACGCAGAAATACTCCGATTGGGGACTCCAACAACAACACCCTCAACCACCGCGACTACTTGCACTGCCGCAGaccaaaccaagaaagaagaaCGATCTTCTATAGTTACCAATTTTAACAAGACCACCGCTGCGGATGATGACGAGGAAAGTCTACGATTGAATCTTGGCGGTGGCCTACGCTTCAGTACAACGGAGGATCCACGGCCAAACAAAAGGGCGCGTTCGGGCTCACCCGCTGGAACCTCGTATCCAATGTGTCAGGTGGATAACTGCAAGGAAGATCTCTCCAATGCTAAAGACTACCACCGCCGGCATAAAGTATGTGAGGTTCACAGCAAATCTTCTAAAGCGCTTGTCGCCAAGCAAATGCAAAGGTTCTGCCAGCAGTGTAGCAGATTTCACCCTCTGTCAGAATTTGATGAGGGGAAGAGAAGTTGTAGACGCAGACTTGCCGGGCATAATCGCCgaagaagaaaaacccaaCCAGAAGATGTTACCTCCCGGATCCTAATTCCTGGAAACCAAGATAACGCAACAACTGGCAACTTGGATATTGTCAATTTGTTGACTGCTATAGCTCGTGCACAAGGAAAGTTTGAGGAAAGAACCAAGATTTGCTCACAGCTTCCAGATAGAGACCAGCTCGTTCAGATTCTTAATAGAATACATTTACCAACTGACCTTGCAACGAAGTTTCCCAATGTTGGAAATTTCAATGGCAGAGCCACTCTGTCAGCATCTGCTCCTGATGCCCTTGCATTACTGTCTCAAAAGAGTAGCCAGAGTAGTGATAGTGAGAAGTCTAGAAGTAGTGGTGCGGACCAAATTATGGAGCCAAGTTTACAAACAAGACAACCCTTAGAATTTACTTCAGTCGGAGGAGAAAGAAGTAGTAGCAGTCACCAGTCTCCAGTTGACGATTCAGACTGCCAAGTTCAGGacactcaaattaatttaccatTGCAGCTATTTGGATCATCTCCAGAAGATGAAAGCCCACCAAAACTGGCATCTTTAAGGAAGTATTTCTCATCTGACAGCAGTAATCCTGTTGAAGAGAGGTCACCGTCATCTTCGCCAAAGAAATTCACGTTGCAGGGTGTGAATGGAGGTGTCAAATCTGAGAAACTATCAATTGGTAGAAACTTAAGTGCAAATAAGAAAGCTGGCGAAAGTCATGACTGTGATATTTCTCTTGATCTTTTTAGAGGGTTAAACAGTGGAATTCAACCTAGTTCATTTCAAAGTGCTCCCTTTCAAGCTGGGTATACATCTTCAGGCTCTGATCATTCGCCTCCCAGTTTGAACTCAGATGTTCAGGATCGTACTGGGCGAATAATGTTTAAACTATTTGACAAGGATCCTAGTCATCTCCCAGGAACACTGCGGACTCAGATTTACAGTTGGCTTTCTAATAGTCCATCAGACATGGAGAGTTACATAAGACCTGGCTGTGTGATCCTATCAGTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGCAAcTAGAAGGAAACTTCCTTCAACGTGTTCATTCTTTAATTGAGAGTTCCGATTCTGATCTTTGGAAGAATGGAAGGCTTTTAGCTCATACTGGCAGTCAGTTAGTATCACTTAAAGATGGAAAGACTCGCTTATGCAAACACTGGAGAACTTGGAGATCTCCCGAGTTGATATCGGTATCCCCTCTGGCCATTGTAGGTGGGCAAGAAACCTCCCTTTTATTGAAGGGTAGAAATTTGTCAACTCCTGGCACCAAGATTCATTGTACAAATATGGGTTGTTACTCATCAGAGGAAGTTATAGGATCTGCATATCCAGATAGAACCTATGATGAGATAAAATTGGATGGTTTTAAAGTTCACAATGTGTTTCCTAGTGTTCTTGGCCGCTGTTTTATAGAGGTTGAGAATGGTTTCAAGGGCAACAGTTTTCCAGTGATAATAGCTGATGCAAAGATTTGTAAGGAATTGAGACTACTTGAATCTGAGTTTGATATGGGTACAAATATATGTGATGCCATTTCAGAGGAGCATGCTAATGATTTTGGAAGGCCCAGGTCAAGAGATGAGGTTTTGCACTTCTTAAATGAGCTTGGATGGTtgtttcaaagaaaaaggtcCTCGTATGCACATGAGGTTTCTGATTATTCCCTTGAAAGGTTcaagtttttacttttatttgctGTGGAAAGAAACTGTTGCACATTAGTCAAGACCCTTCTAGATATGATGGTCGAGAAACACTTGGAAGGGGATTGGTTATCGAAGGGTTCAGTGGAGATGCTAAATGCCGCTCAACTCTTAAACCAAGCTGTGAAAAGAAGGTATACAGACATGATTGATTTGCTCATCCAATACTCAATACCTAGCATGAAAGATACATCCAGGAAATATGTATTTCCTCCAAATCTTGAAGGGCCTGGTGGTATTACACCCTTGCATTTGGCTGCTTGCACATCTGGTTCTGAGGGTGTGATTGATGCTTTAACAAATGACCCCCTGGAGATTGGATTGAAGTGCTGGGAATCCCTCATTGATGCAAACGGGCAGACTCCACATACCTATGCCATCATGAGGAATAATCACTCTTATAACTCGGTGGTTGCTCGTAAACTTGCTGATAGAAGAAATAGTCAAGTTTCAGTAACAATTGAAAATGAGATGGAGCAGTCATCACTTGCAATTGAGCAGAAGCCATGGTTTGGTAGTCATGGCAAACAAGATCAGAGATCTTGTGCAAAGTGTGCCATTGCAGCTATGCACTACAACAGGAGAGTTCCAGCTTCACAGGGTTTGCTTCACAGGCCGTACGTTCACTCAATGCTTGCTATTGCTGCTGTCTGTGTATGTGTTTGTCTATTCTTGCGTGGGGCCCCTGACATAGGGTCAGTTGCACCCTTCAAGTGGGAAAGTTTGGATTATGGCACAATGTA 3368 0.4198 MPAPKRQRKWSLLHVKEKRWDLLKKKRKSKEREEGWMRRFRSVSVLLNYSLNLLLDGLFRSELTTLLHNKIAKMEKVAAQVAAPIFIHQTLSSRFCETPAMAKKRDFTYATSPNFLHRQLQNPNDNWNPKGWDWDSARFVGKPLDAEILRLGTPTTTPSTTATTCTAADQTKKEERSSIVTNFNKTTAADDDEESLRLNLGGGLRFSTTEDPRPNKRARSGSPAGTSYPMCQVDNCKEDLSNAKDYHRRHKVCEVHSKSSKALVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSRILIPGNQDNATTGNLDIVNLLTAIARAQGKFEERTKICSQLPDRDQLVQILNRIHLPTDLATKFPNVGNFNGRATLSASAPDALALLSQKSSQSSDSEKSRSSGADQIMEPSLQTRQPLEFTSVGGERSSSSHQSPVDDSDCQVQDTQINLPLQLFGSSPEDESPPKLASLRKYFSSDSSNPVEERSPSSSPKKFTLQGVNGGVKSEKLSIGRNLSANKKAGESHDCDISLDLFRGLNSGIQPSSFQSAPFQAGYTSSGSDHSPPSLNSDVQDRTGRIMFKLFDKDPSHLPGTLRTQIYSWLSNSPSDMESYIRPGCVILSVYASMSSAAWEQLEGNFLQRVHSLIESSDSDLWKNGRLLAHTGSQLVSLKDGKTRLCKHWRTWRSPELISVSPLAIVGGQETSLLLKGRNLSTPGTKIHCTNMGCYSSEEVIGSAYPDRTYDEIKLDGFKVHNVFPSVLGRCFIEVENGFKGNSFPVIIADAKICKELRLLESEFDMGTNICDAISEEHANDFGRPRSRDEVLHFLNELGWLFQRKRSSYAHEVSDYSLERFKFLLLFAVERNCCTLVKTLLDMMVEKHLEGDWLSKGSVEMLNAAQLLNQAVKRRYTDMIDLLIQYSIPSMKDTSRKYVFPPNLEGPGGITPLHLAACTSGSEGVIDALTNDPLEIGLKCWESLIDANGQTPHTYAIMRNNHSYNSVVARKLADRRNSQVSVTIENEMEQSSLAIEQKPWFGSHGKQDQRSCAKCAIAAMHYNRRVPASQGLLHRPYVHSMLAIAAVCVCVCLFLRGAPDIGSVAPFKWESLDYGTM 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01810 1122 MobiDBLite consensus disorder prediction 488 510 - -
Bva06g01810 1122 MobiDBLite consensus disorder prediction 401 456 - -
Bva06g01810 1122 ProSiteProfiles Zinc finger SBP-type profile. 228 305 IPR004333 GO:0003677
Bva06g01810 1122 SUPERFAMILY Ankyrin repeat 869 1008 IPR036770 -
Bva06g01810 1122 Gene3D - 222 292 IPR036893 GO:0003677|GO:0005634
Bva06g01810 1122 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 387 1122 IPR044817 GO:0003677
Bva06g01810 1122 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 112 385 IPR044817 GO:0003677
Bva06g01810 1122 SUPERFAMILY SBT domain 229 309 IPR036893 GO:0003677|GO:0005634
Bva06g01810 1122 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 112 385 - -
Bva06g01810 1122 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 387 1122 - -
Bva06g01810 1122 MobiDBLite consensus disorder prediction 202 227 - -
Bva06g01810 1122 MobiDBLite consensus disorder prediction 561 584 - -
Bva06g01810 1122 Pfam SBP domain 231 304 IPR004333 GO:0003677
Bva06g01810 1122 Gene3D - 862 1044 IPR036770 -
Bva06g01810 1122 MobiDBLite consensus disorder prediction 488 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01810 Bva-Chr6 12503994 12509719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01810 74 1122 SBP-box Gene Family AT1G20980 52.598 0.0 1015
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva06g01810 SBP 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01810 - - vvi:100240978 1347.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01810 06 12503994 12509719 Bva06g01810 06 12503994 12509719 ECH