Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01797 ATGGCAGCAAGGTATTGGTGTCATATGTGCTCTCAAATGGTAAATCCCATCATGGAAGTGGAGATTAAATGCCCATTTTGCCAAAGTGGATTTGTTGAAGAAATGAGTAGCACCAGCACCACCACCACTAGCAGCAATCATAATACCGCAGAAGCTGATTTTGGATCTGATAGAGCCCTCTCCCTATGGGCCCCAATCTTGCTAGGCATGATGGGCAATCCACGTCGTCAGCGAAGAATCAGACAATTAGACCTTGgcgatgatgatgataatgatgCCCACGATGATGACGGTAGTGAAGGCCGCCATACTGAAGAAACTGAATATGATCGAGAGCTTGAGTCCATTCTTCggaggaggagaagaagaagctcaGCAACCATTCTACAACTGCTTCAAGGCATAAGAGCTGGATTGGCATCTGAATCATATGAGACTTCTGAAGGTGATGACGGTGAcagggaaagagaaagagagcgTGTAATCTTGATTAATCCTTTTAATCAGACAATCATTGTCCAAGGTTCCTATGATTCAAACTGGGATCAGAATGATGACCATAACCCCGTTGGGTCTCTGGGTGATTATTTCATAGGACCTGGATTGGATTTATTGCTGCAACATTTGGCAGAGAATGATCCGAATAGATATGGAACTCCACCTGCACAGAAGGAGGCAATCGAAGCATTACCTACTGTGACAATCAATGAAAATTTGCAGTGTTCTGTTtgtttggatgattttgaaattggtTCTGAAGCCAAGGAGATGCCTTGTAAACATAGGTTTCATAATGGGTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCCTGTCCAGTGTGCAGGTTTCAATTGCCTATGGATGAATGCAAACGAGGCTCTGAAGCATTTAGGAATGATAGCAGGGATAACCAAAGGGATATTGAAGATGTTGGTCTTGTGCAACATGACAGAGGGAGTGGTGAAGAGGGAGATGTTGATGGGAGAAATGGAAGTGGGGGTAGAAGATTCTCATTTCCGTGGCCTTTCAATGgattattttcttcctcaaaCTCCTCATCTTCATCTAGTTCTAATGCAAACGGAAATGATACTCAAACCGACGACAACTG 1112 0.4002 MAARYWCHMCSQMVNPIMEVEIKCPFCQSGFVEEMSSTSTTTTSSNHNTAEADFGSDRALSLWAPILLGMMGNPRRQRRIRQLDLGDDDDNDAHDDDGSEGRHTEETEYDRELESILRRRRRRSSATILQLLQGIRAGLASESYETSEGDDGDRERERERVILINPFNQTIIVQGSYDSNWDQNDDHNPVGSLGDYFIGPGLDLLLQHLAENDPNRYGTPPAQKEAIEALPTVTINENLQCSVCLDDFEIGSEAKEMPCKHRFHNGCILPWLELHSSCPVCRFQLPMDECKRGSEAFRNDSRDNQRDIEDVGLVQHDRGSGEEGDVDGRNGSGGRRFSFPWPFNGLFSSSNSSSSSSSNANGNDTQTDDN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01797 370 SUPERFAMILY RING/U-box 230 288 - -
Bva06g01797 370 MobiDBLite consensus disorder prediction 343 370 - -
Bva06g01797 370 MobiDBLite consensus disorder prediction 84 112 - -
Bva06g01797 370 MobiDBLite consensus disorder prediction 96 112 - -
Bva06g01797 370 SMART ring_2 241 281 IPR001841 -
Bva06g01797 370 MobiDBLite consensus disorder prediction 296 370 - -
Bva06g01797 370 Pfam Ring finger domain 240 282 IPR001841 -
Bva06g01797 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 288 IPR013083 -
Bva06g01797 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 349 - -
Bva06g01797 370 Pfam zinc-ribbon 4 35 IPR039525 GO:0061630
Bva06g01797 370 MobiDBLite consensus disorder prediction 296 330 - -
Bva06g01797 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 349 - -
Bva06g01797 370 CDD RING-H2_RNF126_like 240 282 - -
Bva06g01797 370 ProSiteProfiles Zinc finger RING-type profile. 241 282 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01797 Bva-Chr6 12381661 12384072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01797 105 288 C3H Transcription Factor Family AT1G26800 37.968 1.05e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01797 K11982 - gmx:100784876 463.766