Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva06g01762 | ATGGAGTCCGATTCAGACTCCGATGGATCTCATGTCTCTGCGACTCCTCCTAGAGAAGTAAGTCCACCATCATTGCCTTCTCCACCTTCACAGCCACCACCTATTCTCGTTTCCAAGAATTCCAGAATCAGAATTAAAGCCTCTTCTTCCTCCAACTCCAAACtctcaaattctaaattaaacCCTTCAAAACCAACCAAAACCCAGTCGAGACCCCAATCCTCTCAGCTAGACCCGCCATCTAACCCTCTTCCCCTCCCCATTTTACCATTCCAAATCCTACGACCTTCTGAAAGTAGTTCCACATTATCAACTGCACAGTCCATTGAGACCCTCCCAGCTGGGTTCTTCTCCAAGTCCACGTCGTTCTCAAGATTTCGAAGACCCTTTCTCAACTGTGATACTTTTGGAAAAGAACCTTTACTTGATTCAGTGCGTTATTCGGACTCGAAAACTCAGAGCAATGAGATTCCGTGCCGGGAAGGAGAATCTATCCCAGCACAAGTCAATGACGAAGGCCTTGGAGGTAGGAATTCggaaaaatttagaaagagaTATCCTAATCTGGTTGGGGCAGATGTGCCAATGCCCCCTGTCAAGCTGCTAAAATGTGGTGGTGAGGGTAACTATGTGAGGTTGAACATTAACAGCAAGAGGAGGAAGTTTGTGAACAGGGCGAGAAAGAAGAACTGTATACCGACTGGCCGTAGAAGTTACAGGAGAAATAAAGGTAAATTGAAACAAGAGGGGGAAGATCAAACGCAGAATGTCTTAGAGGAGGATGGTGTGGTTGTACAAACGACACAACAGAAGCACAGGGAGTCATGTGGAACGAGGCAATTAAATTGCGAACTGGTCGAAGAGGCACTGTCAGCAGCTCGACATGAACCGTCCGATGAGAACTTGCTGAACTtggtgaaattaatttatggttATGATTCTTTTCGAGATGGGCAACTGGAGGCAATTAATATGGTGCTTGCTGGGAAGTCGACGATGCTTATTTTGCCCACTGGCGCTGGAAAGTCACTGTGTTATCAATTACCCTCAATGCTTTTACCTGGGATCACCCTGGTTGTTAGTCCACTTGTAGCCTTAATGATTGATCAGCTAAGACAATTGCCTCCTGTTATTAGCGGTGGTCTTCTATGCAGTAGTCAGACGCCTGAAGAAGCCTCTGAATCACTGAAGCAACTTAAGCAAGGAACAGTAAAGGTACTTTTTGTTTCACCAGAGAGGTTTCTGAATGAAGAGTTTCTATCAATCATTTCGGCTACTTCAGCCATATCACTTGTTGTGGTTGATGAAGCTCATTGTTTATCTGAATGGTCTCACAATTTCAGGCCTTCATTCATGAGGCTCAGAGCATCTTTACTTCAGAACAGGCTTAATGTAGGTTCCGTCCTTGCAATGACAGCAACTGCCACTACAATAACTTTAAATGCCATCATGTCTGCTCTAGATATCCCTGGCACAAACCTTATTCAGAAACCGCAGTTAAGGGACAATTTACATTTATCGGTATCTTTGGCCAGAAATAGGATGAAAGACTTATTGATGCTAATAAAGTCTTCTCCTTTTGTGGAAGTTCAAAGCATTATCATATACTGCAAATTCCAGTCTGAAACTGATCTCGTAAGCAGATACTTGAATGATAACAGTATCTCCGCAAAGAGTTATCATAGTGGTATCAGTGCCAAGGAACGCAGCTATGTACAGGAGTTGTTCAGTTTGAACAAGATCAGAGTGGTTGTTGCAACAGTGGCATTTGGCATGGGCGTTGACAAAAGGGATGTTGGAGCTGTAATTCATTACAGTTTGCCAGAAAGTTTGGAGGAGTATGTACAGGAGACTGGACGTGCTGGAAGGGATGGGAGGTTGTCCCACTGTCAtctgttttatgattttgataCTTATGTTAAACTTCGTAGTCTAATGAACAGTGATGGAGTGGATGAATATGCAGTCAACAAGTTGCTGTCTGAGGTGTTTACTGGTGACAGAAGTTCCTGTGGGAAAATGTGTTCCTTAGTTAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATTCTCACACTTCTCACACGCTTGGAGTTGGGTGACGTGCAGTACTTGCATTTACTTCCACAGATATATACAACTTGcactttgaattttcataaGACCCTCCCACAGTTGCTTTGCCAAAAGTTTTCTGCTGTTGCCACTATTTTAAAAAGGTCTGAGAATAAGCAAGGGCAATATGTGTTTGACATACCCTCTGTGGCAAATGACATGGGGGTTACAGCTGTTGAATTATCAAGTCAGTTGTACGATCTAAAGTTGATGGGAGAAATAACTTACGAGATGAAGGACTTAGCTTACTGTTACAAGATTCTTGAAGTTCCTACAGATTTCCTTTCTCTGTCAGCCGATCTATCCCAATGGTTATCAGAGGTTGAAAGTTGTAAGGTCCGGAAACTGGATGTGATGTTTAATGCTGCATATTTTGCAGTAGAAGTTTGTGATAAAATGTATGGTTGCAGTGGTGCCAATCACACACCATGCTTGCAAAGGAAGATATTGGATTACTTTGCTGGAGTTGAAAAGAATGATATCTCCAATAAGATTGATCAAAGCAGCCCTTTCCTACAAGCTGATATAAAGGTCTTTCTACGGAGCAATTTACAGGCCAAATTCACACCAAGAGCTGTAGCAAGGATTATGCACGGAATAGCCAGCCCAGCCTATCCTTCGACAACGTGGTCTAAAACTCATTTCTGGGGAAGGTATACTCATATAGACTTTCAAGTGGTGATGGAAGCAGCGAAGGCAGAACTTAAGAAGACTGTTGGAAAAGATATGCTCTA | 2858 | 0.4199 | MESDSDSDGSHVSATPPREVSPPSLPSPPSQPPPILVSKNSRIRIKASSSSNSKLSNSKLNPSKPTKTQSRPQSSQLDPPSNPLPLPILPFQILRPSESSSTLSTAQSIETLPAGFFSKSTSFSRFRRPFLNCDTFGKEPLLDSVRYSDSKTQSNEIPCREGESIPAQVNDEGLGGRNSEKFRKRYPNLVGADVPMPPVKLLKCGGEGNYVRLNINSKRRKFVNRARKKNCIPTGRRSYRRNKGKLKQEGEDQTQNVLEEDGVVVQTTQQKHRESCGTRQLNCELVEEALSAARHEPSDENLLNLVKLIYGYDSFRDGQLEAINMVLAGKSTMLILPTGAGKSLCYQLPSMLLPGITLVVSPLVALMIDQLRQLPPVISGGLLCSSQTPEEASESLKQLKQGTVKVLFVSPERFLNEEFLSIISATSAISLVVVDEAHCLSEWSHNFRPSFMRLRASLLQNRLNVGSVLAMTATATTITLNAIMSALDIPGTNLIQKPQLRDNLHLSVSLARNRMKDLLMLIKSSPFVEVQSIIIYCKFQSETDLVSRYLNDNSISAKSYHSGISAKERSYVQELFSLNKIRVVVATVAFGMGVDKRDVGAVIHYSLPESLEEYVQETGRAGRDGRLSHCHLFYDFDTYVKLRSLMNSDGVDEYAVNKLLSEVFTGDRSSCGKMCSLVKESASRRFDMKEEVILTLLTRLELGDVQYLHLLPQIYTTCTLNFHKTLPQLLCQKFSAVATILKRSENKQGQYVFDIPSVANDMGVTAVELSSQLYDLKLMGEITYEMKDLAYCYKILEVPTDFLSLSADLSQWLSEVESCKVRKLDVMFNAAYFAVEVCDKMYGCSGANHTPCLQRKILDYFAGVEKNDISNKIDQSSPFLQADIKVFLRSNLQAKFTPRAVARIMHGIASPAYPSTTWSKTHFWGRYTHIDFQVVMEAAKAELKKTVGKDML | 952 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva06g01762 | 952 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
Bva06g01762 | 952 | CDD | SF2_C_RecQ | 501 | 634 | - | - | |
Bva06g01762 | 952 | SMART | helicmild6 | 544 | 625 | IPR001650 | - | |
Bva06g01762 | 952 | Pfam | DEAD/DEAH box helicase | 317 | 476 | IPR011545 | GO:0003676|GO:0005524 | |
Bva06g01762 | 952 | SMART | ultradead3 | 311 | 500 | IPR014001 | - | |
Bva06g01762 | 952 | Gene3D | - | 286 | 492 | IPR027417 | - | |
Bva06g01762 | 952 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Bva06g01762 | 952 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 306 | 663 | IPR004589 | GO:0004386|GO:0006310 | |
Bva06g01762 | 952 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 430 | 439 | IPR002464 | - | |
Bva06g01762 | 952 | MobiDBLite | consensus disorder prediction | 42 | 77 | - | - | |
Bva06g01762 | 952 | Gene3D | - | 501 | 682 | IPR027417 | - | |
Bva06g01762 | 952 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 41 | 875 | - | - | |
Bva06g01762 | 952 | Pfam | Helicase conserved C-terminal domain | 529 | 624 | IPR001650 | - | |
Bva06g01762 | 952 | CDD | DEXHc_RecQ4-like | 303 | 500 | - | - | |
Bva06g01762 | 952 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 323 | 493 | IPR014001 | - | |
Bva06g01762 | 952 | PANTHER | ATP-DEPENDENT DNA HELICASE Q4 | 41 | 875 | - | - | |
Bva06g01762 | 952 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 355 | 644 | IPR027417 | - | |
Bva06g01762 | 952 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 514 | 664 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva06g01762 | Bva-Chr6 | 12214164 | 12221520 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva06g01762 | 534 | 657 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.365 | 7.35e-11 | 63.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva06g01762 | K10730 | - | gmx:100811214 | 1184.47 |