Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01762 ATGGAGTCCGATTCAGACTCCGATGGATCTCATGTCTCTGCGACTCCTCCTAGAGAAGTAAGTCCACCATCATTGCCTTCTCCACCTTCACAGCCACCACCTATTCTCGTTTCCAAGAATTCCAGAATCAGAATTAAAGCCTCTTCTTCCTCCAACTCCAAACtctcaaattctaaattaaacCCTTCAAAACCAACCAAAACCCAGTCGAGACCCCAATCCTCTCAGCTAGACCCGCCATCTAACCCTCTTCCCCTCCCCATTTTACCATTCCAAATCCTACGACCTTCTGAAAGTAGTTCCACATTATCAACTGCACAGTCCATTGAGACCCTCCCAGCTGGGTTCTTCTCCAAGTCCACGTCGTTCTCAAGATTTCGAAGACCCTTTCTCAACTGTGATACTTTTGGAAAAGAACCTTTACTTGATTCAGTGCGTTATTCGGACTCGAAAACTCAGAGCAATGAGATTCCGTGCCGGGAAGGAGAATCTATCCCAGCACAAGTCAATGACGAAGGCCTTGGAGGTAGGAATTCggaaaaatttagaaagagaTATCCTAATCTGGTTGGGGCAGATGTGCCAATGCCCCCTGTCAAGCTGCTAAAATGTGGTGGTGAGGGTAACTATGTGAGGTTGAACATTAACAGCAAGAGGAGGAAGTTTGTGAACAGGGCGAGAAAGAAGAACTGTATACCGACTGGCCGTAGAAGTTACAGGAGAAATAAAGGTAAATTGAAACAAGAGGGGGAAGATCAAACGCAGAATGTCTTAGAGGAGGATGGTGTGGTTGTACAAACGACACAACAGAAGCACAGGGAGTCATGTGGAACGAGGCAATTAAATTGCGAACTGGTCGAAGAGGCACTGTCAGCAGCTCGACATGAACCGTCCGATGAGAACTTGCTGAACTtggtgaaattaatttatggttATGATTCTTTTCGAGATGGGCAACTGGAGGCAATTAATATGGTGCTTGCTGGGAAGTCGACGATGCTTATTTTGCCCACTGGCGCTGGAAAGTCACTGTGTTATCAATTACCCTCAATGCTTTTACCTGGGATCACCCTGGTTGTTAGTCCACTTGTAGCCTTAATGATTGATCAGCTAAGACAATTGCCTCCTGTTATTAGCGGTGGTCTTCTATGCAGTAGTCAGACGCCTGAAGAAGCCTCTGAATCACTGAAGCAACTTAAGCAAGGAACAGTAAAGGTACTTTTTGTTTCACCAGAGAGGTTTCTGAATGAAGAGTTTCTATCAATCATTTCGGCTACTTCAGCCATATCACTTGTTGTGGTTGATGAAGCTCATTGTTTATCTGAATGGTCTCACAATTTCAGGCCTTCATTCATGAGGCTCAGAGCATCTTTACTTCAGAACAGGCTTAATGTAGGTTCCGTCCTTGCAATGACAGCAACTGCCACTACAATAACTTTAAATGCCATCATGTCTGCTCTAGATATCCCTGGCACAAACCTTATTCAGAAACCGCAGTTAAGGGACAATTTACATTTATCGGTATCTTTGGCCAGAAATAGGATGAAAGACTTATTGATGCTAATAAAGTCTTCTCCTTTTGTGGAAGTTCAAAGCATTATCATATACTGCAAATTCCAGTCTGAAACTGATCTCGTAAGCAGATACTTGAATGATAACAGTATCTCCGCAAAGAGTTATCATAGTGGTATCAGTGCCAAGGAACGCAGCTATGTACAGGAGTTGTTCAGTTTGAACAAGATCAGAGTGGTTGTTGCAACAGTGGCATTTGGCATGGGCGTTGACAAAAGGGATGTTGGAGCTGTAATTCATTACAGTTTGCCAGAAAGTTTGGAGGAGTATGTACAGGAGACTGGACGTGCTGGAAGGGATGGGAGGTTGTCCCACTGTCAtctgttttatgattttgataCTTATGTTAAACTTCGTAGTCTAATGAACAGTGATGGAGTGGATGAATATGCAGTCAACAAGTTGCTGTCTGAGGTGTTTACTGGTGACAGAAGTTCCTGTGGGAAAATGTGTTCCTTAGTTAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATTCTCACACTTCTCACACGCTTGGAGTTGGGTGACGTGCAGTACTTGCATTTACTTCCACAGATATATACAACTTGcactttgaattttcataaGACCCTCCCACAGTTGCTTTGCCAAAAGTTTTCTGCTGTTGCCACTATTTTAAAAAGGTCTGAGAATAAGCAAGGGCAATATGTGTTTGACATACCCTCTGTGGCAAATGACATGGGGGTTACAGCTGTTGAATTATCAAGTCAGTTGTACGATCTAAAGTTGATGGGAGAAATAACTTACGAGATGAAGGACTTAGCTTACTGTTACAAGATTCTTGAAGTTCCTACAGATTTCCTTTCTCTGTCAGCCGATCTATCCCAATGGTTATCAGAGGTTGAAAGTTGTAAGGTCCGGAAACTGGATGTGATGTTTAATGCTGCATATTTTGCAGTAGAAGTTTGTGATAAAATGTATGGTTGCAGTGGTGCCAATCACACACCATGCTTGCAAAGGAAGATATTGGATTACTTTGCTGGAGTTGAAAAGAATGATATCTCCAATAAGATTGATCAAAGCAGCCCTTTCCTACAAGCTGATATAAAGGTCTTTCTACGGAGCAATTTACAGGCCAAATTCACACCAAGAGCTGTAGCAAGGATTATGCACGGAATAGCCAGCCCAGCCTATCCTTCGACAACGTGGTCTAAAACTCATTTCTGGGGAAGGTATACTCATATAGACTTTCAAGTGGTGATGGAAGCAGCGAAGGCAGAACTTAAGAAGACTGTTGGAAAAGATATGCTCTA 2858 0.4199 MESDSDSDGSHVSATPPREVSPPSLPSPPSQPPPILVSKNSRIRIKASSSSNSKLSNSKLNPSKPTKTQSRPQSSQLDPPSNPLPLPILPFQILRPSESSSTLSTAQSIETLPAGFFSKSTSFSRFRRPFLNCDTFGKEPLLDSVRYSDSKTQSNEIPCREGESIPAQVNDEGLGGRNSEKFRKRYPNLVGADVPMPPVKLLKCGGEGNYVRLNINSKRRKFVNRARKKNCIPTGRRSYRRNKGKLKQEGEDQTQNVLEEDGVVVQTTQQKHRESCGTRQLNCELVEEALSAARHEPSDENLLNLVKLIYGYDSFRDGQLEAINMVLAGKSTMLILPTGAGKSLCYQLPSMLLPGITLVVSPLVALMIDQLRQLPPVISGGLLCSSQTPEEASESLKQLKQGTVKVLFVSPERFLNEEFLSIISATSAISLVVVDEAHCLSEWSHNFRPSFMRLRASLLQNRLNVGSVLAMTATATTITLNAIMSALDIPGTNLIQKPQLRDNLHLSVSLARNRMKDLLMLIKSSPFVEVQSIIIYCKFQSETDLVSRYLNDNSISAKSYHSGISAKERSYVQELFSLNKIRVVVATVAFGMGVDKRDVGAVIHYSLPESLEEYVQETGRAGRDGRLSHCHLFYDFDTYVKLRSLMNSDGVDEYAVNKLLSEVFTGDRSSCGKMCSLVKESASRRFDMKEEVILTLLTRLELGDVQYLHLLPQIYTTCTLNFHKTLPQLLCQKFSAVATILKRSENKQGQYVFDIPSVANDMGVTAVELSSQLYDLKLMGEITYEMKDLAYCYKILEVPTDFLSLSADLSQWLSEVESCKVRKLDVMFNAAYFAVEVCDKMYGCSGANHTPCLQRKILDYFAGVEKNDISNKIDQSSPFLQADIKVFLRSNLQAKFTPRAVARIMHGIASPAYPSTTWSKTHFWGRYTHIDFQVVMEAAKAELKKTVGKDML 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01762 952 MobiDBLite consensus disorder prediction 1 89 - -
Bva06g01762 952 CDD SF2_C_RecQ 501 634 - -
Bva06g01762 952 SMART helicmild6 544 625 IPR001650 -
Bva06g01762 952 Pfam DEAD/DEAH box helicase 317 476 IPR011545 GO:0003676|GO:0005524
Bva06g01762 952 SMART ultradead3 311 500 IPR014001 -
Bva06g01762 952 Gene3D - 286 492 IPR027417 -
Bva06g01762 952 MobiDBLite consensus disorder prediction 19 35 - -
Bva06g01762 952 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 306 663 IPR004589 GO:0004386|GO:0006310
Bva06g01762 952 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 430 439 IPR002464 -
Bva06g01762 952 MobiDBLite consensus disorder prediction 42 77 - -
Bva06g01762 952 Gene3D - 501 682 IPR027417 -
Bva06g01762 952 PANTHER DNA HELICASE RECQ FAMILY MEMBER 41 875 - -
Bva06g01762 952 Pfam Helicase conserved C-terminal domain 529 624 IPR001650 -
Bva06g01762 952 CDD DEXHc_RecQ4-like 303 500 - -
Bva06g01762 952 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 323 493 IPR014001 -
Bva06g01762 952 PANTHER ATP-DEPENDENT DNA HELICASE Q4 41 875 - -
Bva06g01762 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 644 IPR027417 -
Bva06g01762 952 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 664 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01762 Bva-Chr6 12214164 12221520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01762 534 657 Eukaryotic Initiation Factors Gene Family AT3G19760 29.365 7.35e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01762 K10730 - gmx:100811214 1184.47