Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01746 ATGGTGAAGTACTCCAGGGAACCCAACAATCCTACAAAGTCGTGCAAGGCAAGAGGCTCCGACCTCCGAGTTCACTTTAAGAATACCAGGGAGACAGCCCATGCCATCAGGAAGTTACCTTTGGTGAAGGCTAAGAGATACTTGGAGGATGTCGTTGCCCACAAACAGGCCATTCCCTTCAGAAGGTTTTGTCGTGGTGTTGGTAGAACGGCTCAGGCAAAGAACAGACATTCTAATGGACAAGGACGGTGGCCTGTCAAATCTGCAAAGTTCATTCTTGATCTGCTAAAGAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCTCTCTTCGTTTCTCACATTCAGGTTAATCAAGCACAGAAGCAAAGACGTCGGACCTACCGGGCCCATGGAAGAATCAATCCCTATATGTCATCTCCGTGCCACATAGAGCTGATATTGTCTGAAAAGGAAGAACCTGTGCCAAAGGAGCCCGAGACCCAGTTGGCAACAAGCAAAAAGAAGTCCCAGGCTCTTCGAAGTGATGATTTGAACagcatgttttctttcatactATGGTCCCATCTTCTAAAGATGGATTGGCAAGGGCAAAAGCTAGCAGAGCAGTTGATGCAGATAATGCTGCTGGCATTTGCTGTGGTTGCATTTGCAGTTGGATATATCATAGGCTCATTTCAGATGATGATCTTCATTTACGCTGGTGGTGTGGTTCTGACCACATTGGTCACTGTCCCTAATTGGCCCTTTTTCAACCGCCATCCTCTTAAATGGTTAGATTCAAGTGAAGTCGAAAAGCATCCGAAGCCTCAACCATCTGGAAGTTCAAGTTCAAAGAAGAAACCTTCTAAGAAGTA 866 0.4515 MVKYSREPNNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVVAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVPKEPETQLATSKKKSQALRSDDLNSMFSFILWSHLLKMDWQGQKLAEQLMQIMLLAFAVVAFAVGYIIGSFQMMIFIYAGGVVLTTLVTVPNWPFFNRHPLKWLDSSEVEKHPKPQPSGSSSSKKKPSKK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01746 288 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bva06g01746 288 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 196 265 IPR009542 GO:0005787|GO:0006465|GO:0016021
Bva06g01746 288 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Bva06g01746 288 Gene3D Ribosomal protein L22/L17 1 183 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bva06g01746 288 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bva06g01746 288 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bva06g01746 288 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bva06g01746 288 MobiDBLite consensus disorder prediction 265 288 - -
Bva06g01746 288 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 179 - -
Bva06g01746 288 PANTHER 60S RIBOSOMAL PROTEIN L17 1 179 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bva06g01746 288 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01746 Bva-Chr6 12133658 12139062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01746 1 172 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.116 1.51e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01746 K02880 - jre:109003161 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01746 06 12133658 12139062 Bva06g01746 06 12133658 12139062 ECH