Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01731 ATGGAGTGGAACGCATCTGCTTCGCAGTGGGAGTGGGAACACCTATACTTATTAAATCCAAAAGCGACCGAAACTCCTAGGTTACAACAAGCAGACTGGATTTCTGAAGCAGATCGAGAAATCAATGTCAGGTTTTTCTATTCTTCTGGAGGTAATGGTTGTTCTGGGTCGGAAATAATAAATGCTTCTTCATCAAGGAGTTCAAAATCTACTTCCATCAATTCATCATCAAATGAGGAAAGCAAAACATCATTATTCAACTTCGAAGGTTCCCAAGAAGATTCTAGTAGTAAGAATGAAAAGTCAAAAGACGAGCCTCTTGAAACTTCTCCTACACTTGAGCCTTTGCTCAGTCTAAAGCTTGGTAAGCGGCTGTACTTTGAAGATGTTTTCCCTGGGAGTGATACCAAGAACCTGTCCTTCTCTGGGGTTCCACTGCCATCTTTGAGTACCGGAAAGAAAGGTAAGTCCAACTGTCAGGGCATGCAACCTCCGCGTTGCCAGGTTGAGGGCTGTAACCTTGACCTCTCATCAGCTAAAGATTATCATCGGAAGCATAGAGTATGTGAAAGTCATTCCAAATCTCCTAAGGTATTTGTAAATGGTCTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCACAGCCTGTTAGagtttgatgagaaaaagagaagctgCCGCAGACGTCTTTCTGATCACAATGCAAGGCGTCGCAAGCCTCATCCTGAAGCAGTCAAGCTGAATCCATCGGCTTTTTATTTGTCAGAATACGATGGGAGGCAACAGATAAGGCCATTTACTCTTTCAAGGGCTGCTACAAATTTAGCCTGGCAAGATATATACTGCAGCAAGCTACCCCTGACAAAAGATTTTCTCGTCAAGCCTGCAAGAGCAGGAGCTAACAGTGGGCGAGTACATGAGCCCTTCAATGGGATGCCTAGTACCTTCACTGTGCATTCTAATGACACCAATGGCCTTTTTAGATCCACAGGCATAGCAACCAAGACTATCAATCCAGGTGTAGATGACTACGTTACCTCATCTGATCTGAATGCTGCACAGGATTTTCATCGTGCTCCCTCTCTTCTGTCATCCAATTCTTGGGGTTCATATGAGACAAAACCAGTTTCTCAAGAACACTCAAATCACCAAAGTCATACCAGATGCTGCTGCTTTCAACTTGATGAAGTCACATTAAGAGGCATAGGCCGCCACTTCACTTGCCTAAAGGGTCCCCTTTGGATGAAGGACATATATGGCTTCATGGTCTTTTCGAAGCAACTAGATCGTGAGAAATATTCCGTACAAGCACAACCCAAGTATAAACAAGATCAAGATCAAGATAAAAGCACTCGTGAAGTGCGGGCAACAGATCAGACACCATA 1388 0.433 MEWNASASQWEWEHLYLLNPKATETPRLQQADWISEADREINVRFFYSSGGNGCSGSEIINASSSRSSKSTSINSSSNEESKTSLFNFEGSQEDSSSKNEKSKDEPLETSPTLEPLLSLKLGKRLYFEDVFPGSDTKNLSFSGVPLPSLSTGKKGKSNCQGMQPPRCQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVFVNGLERRFCQQCSRFHSLLEFDEKKRSCRRRLSDHNARRRKPHPEAVKLNPSAFYLSEYDGRQQIRPFTLSRAATNLAWQDIYCSKLPLTKDFLVKPARAGANSGRVHEPFNGMPSTFTVHSNDTNGLFRSTGIATKTINPGVDDYVTSSDLNAAQDFHRAPSLLSSNSWGSYETKPVSQEHSNHQSHTRCCCFQLDEVTLRGIGRHFTCLKGPLWMKDIYGFMVFSKQLDREKYSVQAQPKYKQDQDQDKSTREVRATDQTP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01731 462 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
Bva06g01731 462 MobiDBLite consensus disorder prediction 436 462 - -
Bva06g01731 462 Pfam SBP domain 167 240 IPR004333 GO:0003677
Bva06g01731 462 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 389 - -
Bva06g01731 462 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 389 IPR044817 GO:0003677
Bva06g01731 462 MobiDBLite consensus disorder prediction 94 108 - -
Bva06g01731 462 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Bva06g01731 462 MobiDBLite consensus disorder prediction 58 113 - -
Bva06g01731 462 MobiDBLite consensus disorder prediction 436 456 - -
Bva06g01731 462 Gene3D - 157 228 IPR036893 GO:0003677|GO:0005634
Bva06g01731 462 MobiDBLite consensus disorder prediction 58 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01731 Bva-Chr6 12061660 12067667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01731 1 376 SBP-box Gene Family AT5G43270 40.102 2.09e-57 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva06g01731 SBP 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01731 - - gmx:100796013 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01731 06 12061660 12067667 Bva06g01731 06 12061660 12067667 ECH