Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01727 ATGAGTTTGCTACATGTAGTTGGGTTTGGTCTAAAGGTGGGGCATCTACTTTTGCTGCTATGTTGCTGGATTGTGTCTGTCATTTACATGAACTGGTTCATTAACTGTGGAATTATGGACGCCAAGATTGGTGTTGTTGGTGATGGTGCCAAGTTGTGGCTTAAATGGTGGGAGAAGGTCTCCGGGAGCATTTGCAAAATCCACCAACAATACTATCAGTATTTAGGGTCCAAGAGAGTGAAGAGAACGCTGTGGAAAAAGCTGTTGCTGACATGGGTGGTGGGTTGGGTAATAGTATCTTTGTGGATCTTCTGCTACATGAGCTTACAAGCTactgagaagagaaaagagactCTGGCAAGTATGTGTGACGAGAGGGCTAGGATGCTGCAGGATCAGTTTAATGTGAGCATGAATCATATCCAAGCCATGTCCATTCTGATCTCAACCTTCCACCATGCCAAGAACCCTTCTGCTATCGATCAGAGAACATTTGCTAGGTATACAGAAAGAACAGCTTTTGAGAGGCCCCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGGTGGACTATTAAGAGGATGGATACCATGGAGCAGAATCCCGTTCATAAGGACAAGTATGCTCCAGAGGCATTGGAGCCATCCCCTGTTAAGGAAGAATATGCTCCTGTAATCTTTGCGCAGGATACAATTTCACATGTCATTTCTATTGATGTGCTTTCTGGAAAGGAGGACCGTGAAAATGTTTTGCGTGCAAGAGAATCGGGGAAAGGGGTTTTAACCGCTCCTTTCAGGTTGCTTAAAACGAATCGTCTGGGGGTTATCTTGACTTTTGCTGTGTACAAGACGGATCTTCCATCAAATGCAACCCCAAATGAACGAATTCAGGCAACTAATGGGTATCTTGGTGGGGTTTTTGATATTGAGTCATTAGTCGAGAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTGTATGACACTACTAATCATAGACACCCAATTGCCATGTATGGTTCAAATGTGACAGACGATGGGTTCCATCATGTCAGCACCCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCGTGGTCATGGTTGGCAATAACTACTTCATTTGGAATCCTTGTCATCGCACTCCTTGTCGGGTATATTTTCCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGAGATGATGGAGCTTAAAAAGCGAGCTGAGGCAGCTGATGTTGCGAAATCCCAGTTCCTTGCTACTGTTTCCCATGAGATAAGAACGCCCATGAATGGTGTCCTAGGAATGTTGCATATGCTCATGGACACAGATTTAGATGTTACCCAACAGGAATATGTCAGAACGGCACAAGGCAGCGGAAAAGCTCTGGTTTCTCTTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATCTGGAAAGCTAGAGCTCGAGGCAGTGACGTTTGACTTACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGAAAAAGGAGTagagTTGGCAGTTTATATATCAGAAAAGGTTCCTGAACTGCTAATAGGTGATCCTGGAAGGTTTCgacaaataattacaaaccTCATGGGTAACTCAATAAAGTTCACAGAGAAAGGACACATCTTCGTCACTGTCCATCTGGTTGAGGAGATTGTTGGCAAAATAGAAGTTAAGACAGAATCAACATCAAAAGATACCTTGAGTGGTTTTCCCGTCGCAGATAGACGGCTAAGTTGGGAAGGATTTACGACATCCAGTCAAGAAGGACCTGTTGGTCCTTTCTCATCCTCTACTTGTAatctcataaatttaattgtatcTGTTGAAGATACGGGTGAAGGTATTCCTGAAGAAGCTCAGTCTCGTATTTTCACTCCATTCATGCAAGTAGGTCCCTCCATCTCCCGGAAGCATGGGGGTACAGGTATTGGGCTAAGCATTAGTAAGTGTTTAGTTGGCCTCATGAATGGGGAAATTGGATTTGTGAGCAAACCCAAGGTTGGATCTACTTTCACATTTACTGCTGTCTTTACCAATGGATCCCCCACTTCAAATGAATGTAGAAATCAGCAAGTCAACAACCAACCAAACCCTGCATCCTCAGAATTTCAAGGCATGACTGCATTACTTATAGACCCTAGGCCCATTCGAGCAGGAGTGTCAAGATATCACATTCAACGGCTTGGCATTCATGTTGAAATAGTTTCTGATTTAAATCAATGTTTGTCTACCATAAGCAATGGAAGTATGATTTTTGATATGCTACTTGTGGAACAAGAGGTCTGGGATAGGGATCCTGGAAGCATTTCATCTCACTTCATCCATAATACATGGAAAATTGATCGTGGGGTTCTTCCAAAGCTGTTCATTCTTGCTAATTCTAGTAATTCTTTTAGGACAAATTCTGTAGCTTCAGGTCCTACCGTCATCACAAAACCTCTAAGAGCAAGTATGCTTGCTGCCTCGCTGCAGCGAGCCATGGGTGTTGGGAGCAAGGGGAATCCTCGCAATGGGGAACTTCCAAGCTTGTCTCTTCGCCATCTTCTGCACGGGAGAAAAATACTTATTGTAGATGACAATAGTGTGAACCGCAAAGTAGCAGCTGGTGCTTTAAAAAAGTATGGAGCTGAAGTGGTTTGTGTAAATAGTGGAAAAGATGCCATCTCTTTGTTGAAGCCGCCCCATCATTTTAATGCCTGCTTCATGGACATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTAGGAGAATTAGGGAGATGGAACACAGCGTGAACAATGGAGAAGTGTCTATTGAAGCGTTTGAGAATATTTCAAGCTGGCATGTACCTATTTTGGCCATGACTGCAGACGTGATCCAGGCTACGCAAGAGGAATGCCTAAGATGTGGAATGGATGGATATGTTTCAAAGCCATTTGAAGCTGAACAGCTTTATCGAGAGGTTTCCCGATTTTTTCAATCGtctta 3086 0.4235 MSLLHVVGFGLKVGHLLLLLCCWIVSVIYMNWFINCGIMDAKIGVVGDGAKLWLKWWEKVSGSICKIHQQYYQYLGSKRVKRTLWKKLLLTWVVGWVIVSLWIFCYMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTMEQNPVHKDKYAPEALEPSPVKEEYAPVIFAQDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHRHPIAMYGSNVTDDGFHHVSTLNFGDPFRKHEMHCRFKQKPPWSWLAITTSFGILVIALLVGYIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVTFDLRAILDDVLSLFSEKSQEKGVELAVYISEKVPELLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEEIVGKIEVKTESTSKDTLSGFPVADRRLSWEGFTTSSQEGPVGPFSSSTCNLINLIVSVEDTGEGIPEEAQSRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSKPKVGSTFTFTAVFTNGSPTSNECRNQQVNNQPNPASSEFQGMTALLIDPRPIRAGVSRYHIQRLGIHVEIVSDLNQCLSTISNGSMIFDMLLVEQEVWDRDPGSISSHFIHNTWKIDRGVLPKLFILANSSNSFRTNSVASGPTVITKPLRASMLAASLQRAMGVGSKGNPRNGELPSLSLRHLLHGRKILIVDDNSVNRKVAAGALKKYGAEVVCVNSGKDAISLLKPPHHFNACFMDIQMPEMDGFEATRRIREMEHSVNNGEVSIEAFENISSWHVPILAMTADVIQATQEECLRCGMDGYVSKPFEAEQLYREVSRFFQSS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01727 1028 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 642 716 IPR003594 -
Bva06g01727 1028 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 628 IPR003594 -
Bva06g01727 1028 ProSiteProfiles Histidine kinase domain profile. 450 718 IPR005467 -
Bva06g01727 1028 Pfam CHASE domain 159 355 IPR006189 -
Bva06g01727 1028 Pfam Response regulator receiver domain 893 1020 IPR001789 GO:0000160
Bva06g01727 1028 Gene3D - 107 159 - -
Bva06g01727 1028 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Bva06g01727 1028 Gene3D CHASE domain 160 389 IPR042240 -
Bva06g01727 1028 SMART REC_2 891 1021 IPR001789 GO:0000160
Bva06g01727 1028 Coils Coil 420 440 - -
Bva06g01727 1028 PANTHER TWO-COMPONENT HISTIDINE KINASE 55 1027 - -
Bva06g01727 1028 SMART HKATPase_4 555 718 IPR003594 -
Bva06g01727 1028 ProSiteProfiles Response regulatory domain profile. 892 1025 IPR001789 GO:0000160
Bva06g01727 1028 SMART CHASE_2 156 357 IPR006189 -
Bva06g01727 1028 Gene3D - 412 506 - -
Bva06g01727 1028 Gene3D - 886 1028 - -
Bva06g01727 1028 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Bva06g01727 1028 CDD REC_hyHK_CKI1_RcsC-like 893 1021 - -
Bva06g01727 1028 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 509 IPR036097 GO:0000155|GO:0007165
Bva06g01727 1028 CDD HATPase_EvgS-ArcB-TorS-like 560 716 - -
Bva06g01727 1028 Pfam His Kinase A (phospho-acceptor) domain 443 508 IPR003661 GO:0000155|GO:0007165
Bva06g01727 1028 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Bva06g01727 1028 CDD PRTases_typeI 846 920 IPR000836 -
Bva06g01727 1028 SUPERFAMILY CheY-like 741 867 IPR011006 -
Bva06g01727 1028 Gene3D - 507 718 IPR036890 -
Bva06g01727 1028 PRINTS Bacterial sensor protein C-terminal signature 661 671 IPR004358 GO:0016310|GO:0016772
Bva06g01727 1028 PRINTS Bacterial sensor protein C-terminal signature 702 715 IPR004358 GO:0016310|GO:0016772
Bva06g01727 1028 PRINTS Bacterial sensor protein C-terminal signature 643 657 IPR004358 GO:0016310|GO:0016772
Bva06g01727 1028 PRINTS Bacterial sensor protein C-terminal signature 678 696 IPR004358 GO:0016310|GO:0016772
Bva06g01727 1028 PANTHER HISTIDINE KINASE 3 55 1027 - -
Bva06g01727 1028 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 713 IPR036890 -
Bva06g01727 1028 SUPERFAMILY CheY-like 889 1025 IPR011006 -
Bva06g01727 1028 ProSiteProfiles Response regulatory domain profile. 746 866 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01727 Bva-Chr6 12035646 12041969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01727 1 1027 Miscellaneous Gene Families AT1G27320 70.134 0.0 1437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva06g01727 CHASE 2.4e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01727 K14489 - gmx:100801546 1670.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01727 06 12035646 12041969 Bva06g01727 06 12035646 12041969 ECH