Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01721 ATGAAGAAAGCTCGTGAGCTCTCCGTTCTCTGTGATGTTGAGGTCgctcttctcattttctccaGCCGCGGCAAGCTCTACGAGTTCTCTAGTGCTAACAGTTTGGCCAGGGTCCTCCAAAGATATGGGGATCACTTAGAAGCAAGCATTAATGACCAAGCGACGCACCACTCTAAATATGCAGATTTCCGGGTCCATGCAGAACTTGCTCAATTGGTTCAAAGTGGACCTGAACTTGAGCATTTGGATGTGGCTGACCTTGTGAAACTAGAGACACGGCTTCACAACGAACTTTCACGAATCAGATCTAAGAAGATGCAACAATTGGTGGAGTATGTTATGATCCTTAAGAAAAAGGAGCAGATACTTAGGGAAGAAAATGAGCTCCTAAAGAAACAGATTGCTGCAATGAAAAGCGCCAGTCAAACCAATGATCGTAATGTTGGGGGATCGGTACGCATTTCAAACTTGCTTCCTCTTGCAAGCTGGGAGGAGCGAGGTGGAATCTA 509 0.442 MKKARELSVLCDVEVALLIFSSRGKLYEFSSANSLARVLQRYGDHLEASINDQATHHSKYADFRVHAELAQLVQSGPELEHLDVADLVKLETRLHNELSRIRSKKMQQLVEYVMILKKKEQILREENELLKKQIAAMKSASQTNDRNVGGSVRISNLLPLASWEERGGI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01721 169 Coils Coil 113 140 - -
Bva06g01721 169 Pfam K-box region 75 134 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01721 169 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Bva06g01721 169 SMART madsneu2 1 32 IPR002100 GO:0003677|GO:0046983
Bva06g01721 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 29 IPR002100 GO:0003677|GO:0046983
Bva06g01721 169 ProSiteProfiles K-box domain profile. 48 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01721 169 Gene3D - 1 64 IPR036879 GO:0003677|GO:0046983
Bva06g01721 169 ProSiteProfiles MADS-box domain profile. 1 33 IPR002100 GO:0003677|GO:0046983
Bva06g01721 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 1 141 - -
Bva06g01721 169 SUPERFAMILY SRF-like 1 57 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01721 Bva-Chr6 12008330 12014840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01721 1 135 MADS-box Gene Family AT2G03710 40.690 3.73e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva06g01721 K-box 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01721 - K09264 gmx:100804540 142.895