Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01680 ATGGCTTTGGAGCAGCCATTATCACTCGGTCCCATTACGAACCATGCTGACGGTGAGGCAGACGGGACCATTAACGGCGTCGATACTCGGCCGCCGTCGACGGATGGTGGAGACGATGGAAGCAAAGCGCCGAGGCTGCCTCGCTGGACAAGGCAGGAGATCCTCGTTCTGATACAGGGGAAGAGAGATGCAGAGAACCGGTTTCGGGGGGGCCGCGCTGCTGGGTTGTCAGTCGGGTCGGGTCAAGTGGAGCCGAAATGGGCTTCGGTCTCTTCATACTGCAAGAAGCACGGAGTTAATAGAGGACCTGTTCAGTGTCGTAAGAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAGTGGGAGTCTCATATAAGTGAAGAGACGGAATCATTTTGGGTGATGAGAAATGATTTAAGGAGAGAGAAGAAGTTGCCAGGGTTTTTCGACAAGGAGGTTTATGATATTCTTGATTCAGGGTCGCAGGCGCCGGCGTTAGCTCTCTCTCTCGCACCATCTCCGGCAACAGTAACCGAGCCAGCGGAGAAAGGGAAGGACGGTGAAGCAGTGACGGCGGAGGAAACTGAGGTTTATGCGGAGCGTCTTTACGATAGTAATCGGAGTGGGACTACGGGGGATGGATTGTTCTCCGACTTTGAACAAGAGGAGGGGGGTGCGAGTCCGGAGAAGGAGGCGGCAAGAAAGAATGCGTTGGCTATCCCTGCTCCTATTCCAATCTCAGAGAAGCAATATCAGCCACCTCTGCGTCCGTGTGAAGTTGAAGGTAATGCTCAAGGTTTAGGTGCGAACAATGAAAAAGAGGGAGGGTCAAATCCAGAAAGAGGTTCTACGTCGGAAGGAGTACGGAAGAGGAAGAGGCTTAAAACAGATGGAGAAGAGGAAAATTTACAATCTCAATTAATTGATGTGTTGGAAAGAAATGGGAAGATGCTAAACACACAGCTCGAAGCTCAAAACTTGAATTTCCAGTTGGATCGAGAGCAGCGGAAAGACCACGCTCGTGACTTGGTTGCTGTTCTTGATAAGCTTGCAGATGCTCTTGGCAGAATTGCGGATAAATTGTA 1091 0.5087 MALEQPLSLGPITNHADGEADGTINGVDTRPPSTDGGDDGSKAPRLPRWTRQEILVLIQGKRDAENRFRGGRAAGLSVGSGQVEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDYKKIKEWESHISEETESFWVMRNDLRREKKLPGFFDKEVYDILDSGSQAPALALSLAPSPATVTEPAEKGKDGEAVTAEETEVYAERLYDSNRSGTTGDGLFSDFEQEEGGASPEKEAARKNALAIPAPIPISEKQYQPPLRPCEVEGNAQGLGANNEKEGGSNPERGSTSEGVRKRKRLKTDGEEENLQSQLIDVLERNGKMLNTQLEAQNLNFQLDREQRKDHARDLVAVLDKLADALGRIADKL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01680 363 MobiDBLite consensus disorder prediction 1 46 - -
Bva06g01680 363 MobiDBLite consensus disorder prediction 286 304 - -
Bva06g01680 363 Pfam Myb/SANT-like DNA-binding domain 48 137 IPR044822 -
Bva06g01680 363 MobiDBLite consensus disorder prediction 175 305 - -
Bva06g01680 363 Coils Coil 319 339 - -
Bva06g01680 363 CDD GT1 47 121 - -
Bva06g01680 363 ProSiteProfiles Myb-like domain profile. 48 114 IPR001005 -
Bva06g01680 363 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 21 363 - -
Bva06g01680 363 Gene3D - 49 119 - -
Bva06g01680 363 MobiDBLite consensus disorder prediction 183 203 - -
Bva06g01680 363 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 21 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01680 Bva-Chr6 11796027 11798960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01680 48 122 Trihelix Transcription Factor Family AT1G33240 33.333 3.32e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Bva06g01680 Myb_DNA-bind_4 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01680 - - cpap:110807229 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01680 06 11796027 11798960 Bva06g01680 06 11796027 11798960 ECH