Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01678 ATGTCTGCCATGGTCTCCGTTCTCACTCAAGTCATGGGATCAACCGTATCCTCAAACACAACCACCCATCTTAGTCAAAACCCAACCATGGTGCAATCCACCTCCATCTCTGCCGTTAAGGAACAACCATCCCATCAGCCGCTATTAAATCAAGaaatgacAAGGAAAAAGCATTACAGAGGAGTAAGACAAAGACCGTGGGGGAAATGGGCAGCTGAAATACGCGATCCTAAGAAAGCTGCCCGAGTGTGGTTGGGCACCTTTGAGACAGCTGAGGATGCAGCCCTGGCATACGACAAAGCAGCCCTCAAATTCAAAGGCACTAAAGCAAAGCTTAATTTTCCTGAACGAGTTCAAGGGCAACCTAGTACTCACACTATCATTGGCTACGATCATCAAAAAGTGCAGGATGATTCCAGAAACAAAAACCCATTTGATCTCATCTCCAGTACTTGTAATGCAGCCGCAGCCGCAGCCACTATTAGTATCAATGAACCAACTTCTGCTCTCTCATCCACACATATTGGACATGAATATCATCAGCAGCAGCAAGTGTTCCCCAACTTGTTTCAGTATGCACAGCTTCTTTCCAGCAATGACGCGGAATTACCTTATCACGCATCTCATCTCCTCAATCAACAACCTTCTGCTTCCCAATTTCCCACTACTTTGTCTTCGTCTTCATGCACAACATCACCGCCATACCACAAAGAGccacaacaacaacaacaagagCATGATGACCAATACGATATCAGAACCAGTAATCCCAGTGATGATCAGTA 785 0.442 MTRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVQGQPSTHTIIGYDHQKVQDDSRNKNPFDLISSTCNAAAAAATISINEPTSALSSTHIGHEYHQQQQVFPNLFQYAQLLSSNDAELPYHASHLLNQQPSASQFPTTLSSSSCTTSPPYHKEPQQQQQEHDDQYDIRTSNPSDDQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01678 209 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Bva06g01678 209 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bva06g01678 209 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bva06g01678 209 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bva06g01678 209 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bva06g01678 209 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bva06g01678 209 MobiDBLite consensus disorder prediction 188 209 - -
Bva06g01678 209 PANTHER DNA-BINDING DOMAIN 3 179 IPR044808 GO:0003700|GO:0009873
Bva06g01678 209 PANTHER - 3 179 - -
Bva06g01678 209 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Bva06g01678 209 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Bva06g01678 209 MobiDBLite consensus disorder prediction 164 209 - -
Bva06g01678 209 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01678 Bva-Chr6 11780672 11782758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01678 3 159 AP2-EREBP Transcription Factor Family AT5G13330 51.899 2.46e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g01678 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01678 - - gmx:100796624 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01678 06 11780672 11782758 Bva06g01678 06 11780672 11782758 ECH
Bva06g01678 06 11780672 11782758 Bva06g01576 06 11276684 11279055 ECH
Bva06g01678 06 11780672 11782758 Bva05g00184 05 893342 894587 ECH
Bva06g01678 06 11780672 11782758 Bva03g00221 03 1348640 1350521 ECH
Bva06g01678 06 11780672 11782758 Bva04g01911 04 19438822 19440844 ECH