Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01576 ATGTCTGCCATAGTTTCCGCCCTCACTCAAGTTATTGGCGGCAGTGGAAGTGATCCACTTCAATCCATGCCCCACTCCAGCCAAGCTCAAAATCAACAATCCCAAACGCTTCAGGATCAAGgTAACGAAAGAAGGAGACATTATAGAGGAGTAAGGCAAAGGCCATGGGGAAAGTGGGCGGCAGAGATTCGAGATCCAAAGAAGGCAGCGAGAGTGTGGCTTGGAACTTTCAGCACTGCGGAGGCTGCGGCGCTTGCTTATGATGAAGCAGCTCTTAGATTCAAAGGAAGCAAAGCTAAACTCAATTTTCCTGAAAGGGTTCAATTAGGCACCTCTACCCCCCTCACAAATCGTCCACCACCCACTACTCCTTTTCCACAAGACAGTAATCCTCCTAATTTGCAATATCCACAATTTATGAGGACTACCAATGATAATAACTTCAATTACGGCCTGCCTCCTCGTTTCTATTCCACTTCAAGGgacatgttttcttcttcttcgcaGCCGCTACCAGCTGCATCTTCGTCTTCGTCGTCATCTTCTGGACCATCtcaacaagaacaagaacaagagCTTTTGAGGTTTTCGATTCAGTTTGGAGGTTCTTCTTCGAATTATGATCCACCACAGAATTG 638 0.4357 MSAIVSALTQVIGGSGSDPLQSMPHSSQAQNQQSQTLQDQGNERRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFSTAEAAALAYDEAALRFKGSKAKLNFPERVQLGTSTPLTNRPPPTTPFPQDSNPPNLQYPQFMRTTNDNNFNYGLPPRFYSTSRDMFSSSSQPLPAASSSSSSSSGPSQQEQEQELLRFSIQFGGSSSNYDPPQN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01576 212 MobiDBLite consensus disorder prediction 117 131 - -
Bva06g01576 212 Gene3D AP2/ERF domain 46 107 IPR036955 GO:0003700|GO:0006355
Bva06g01576 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF115-LIKE 1 212 - -
Bva06g01576 212 PANTHER DNA-BINDING DOMAIN 1 212 IPR044808 GO:0003700|GO:0009873
Bva06g01576 212 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Bva06g01576 212 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Bva06g01576 212 MobiDBLite consensus disorder prediction 105 147 - -
Bva06g01576 212 MobiDBLite consensus disorder prediction 159 212 - -
Bva06g01576 212 MobiDBLite consensus disorder prediction 14 39 - -
Bva06g01576 212 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Bva06g01576 212 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Bva06g01576 212 MobiDBLite consensus disorder prediction 132 147 - -
Bva06g01576 212 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Bva06g01576 212 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Bva06g01576 212 MobiDBLite consensus disorder prediction 14 55 - -
Bva06g01576 212 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01576 Bva-Chr6 11276684 11279055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01576 1 124 AP2-EREBP Transcription Factor Family AT5G61890 65.441 4.16e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g01576 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01576 - - mesc:110616899 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01576 06 11276684 11279055 Bva05g00184 05 893342 894587 ECH
Bva03g00221 03 1348640 1350521 Bva06g01576 06 11276684 11279055 ECH
Bva04g01911 04 19438822 19440844 Bva06g01576 06 11276684 11279055 ECH
Bva06g01678 06 11780672 11782758 Bva06g01576 06 11276684 11279055 ECH
Bva05g00103 05 522496 523054 Bva06g01576 06 11276684 11279055 ECH
Bva06g01576 06 11276684 11279055 Bva06g01576 06 11276684 11279055 ECH