Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01573 ATGCATTTTGAAATAATGGATCAAAGGGGAGCATCTGCCTCACCCCACTTTTTTGAAGACATCTCCTTCCGATCCGAGAGGGATGTTGGATTGCAGAAGCCAAAACCGAACCTTGATAGTTACCAACAAGGTAAGAACGGTATAGTGGCATCACAAGACAGCATTTTGAATGTTTCGTCACCCCAAGAAACAAGTATGAAGACAGGCTTGCCAATGTCACATATGGTTTTATCTGGAAGTATTACGGAAAAGCCAGCATCTAGCTCATATGGTTTAATTGGAAACAAGATTGTCACTGATGTTGCCTCTCGTGAAAGTAGTCTATTCTCAAGCTCACTATCTGAGATATTTAACCAAAAGTTGAGGTTAATGGGGAATGATGTTCTGTCTCATCAACCCCTTGCTGTTGGTTCCCCTCCTGATAAAGGACCCTATGTACCTCTTGAAGAGATTGGCGCTGAGACTATTGGGAGTCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTCATTGATGAGTTGGGCCACAATGTTCATGCCAGAGCAAGTGATGACTTGgaagattttgatttgtttagcAGTGGTGGAGGCATGGAGCTGGAAGGGGAAGAACATCTAAGTTCaggaaaaagaattgttgGTCTGGATGGAGATTCTGTTTACTTTGGAGGCTCTAAAGGGAAGCTTCCTTTTGGTGGACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAATTAAAGGCTCTCTTTGAGCAATATGGAGAAATCCGAACCACTTATACAGCTTGTAAGCATCGTGGCTTTGTTATGATTTCATATTACGATCTAAGGGCAGCACAAAGTGCAATGAAAGCACTTCAAAACAGATCATTGAGGTCTAGGAAACTTGACATACATTATTCAATCCCAAAGATAAATGCTCCAGAGAAGGATATTAGCCATGGCACATTGGTGCTATCCGGTCTTGATTCTTCTGTGTCAAATCACAAGCTTCATCagatttttagattttatggAGAAGTTAAAGAAATCTATGAAACTCCAGAACTTTATCATCACAAGTTTATAGAGTTTTATGATGTTCGAGCTGCAGAAGCTGCTCTTCATGCATTGAACAGGAGTGACATTGCTGGGAAACAGATTAAGCTCGAACCAGGCCATCCAAGGGGTGCAACATGCCTGATGCAGCAATCTCAGAAGGGACATGATGAACTTGATCTTGGTCAAAGTCTTTGTGACAACTCATTAAGACAGAAGGCAGCAATATCTCCTGGACTTGGCTGCTTGGACAATGAATCCAATCAAGGATTTCAATCTGCAATAGGACTTCCTATGAATGCATTTACTGATAATGCATTCTCTCATGCAAATTCTGGCATTCAAAATGCAGTGAGGGGGGCATCTGCTGGAAAAGCATCTGCTGTTCCCGAATCCAGTAACTTTGCCGACGCAATGAAATTTGCATGTGTTCCAAGATTCCATCCTCATTCCTTCCCTGAGTATCACGATGGTTTAGCCAATGGCAATCCTTACAGCTTTCCAAGCACAATTAGCAATATGGCTGGCAATATTAGTACTGGTGTGACAGAAGGTTCTGATAGCAGGCACATTCAAGGGATTGGTTCAACTGGGAGCCTCATGGAATTTAATGGAGGAGGAAATGGGAGTCACCCACGTCCTGGACTCTATCACATGTGGAACAGCAATCTGCATCAACAATCTCCATCAAGTCCCATGCTTTGGCAGAAAGCACCATCATTTGCTAATGGTGCTTGTGCTCCTAGCCTTCCACGAATGCCCAACTTTCCTAGGACACCGCCTCATATGTTGAGGGCATCACATATAGAGCACCATGTTGGATCTGCACCGGTTGTTACAGCTTCCCCTTGGGACAGGAAATATTCTTATTTGGGAGAGTCTACTGAAGCTTCTGGTTTTCACTTGGGTTCTCTGGGGAGTACAGGTTTTCCTCGTTCCTGGCAATTGCATCCCCCAGATTTTGCTTCTCAGAACATGCTTTCTCATGTTGGTGGAAATGGCACAGAATTTATGCCCAATGCTGGGCAGAGCTCTCCCAATCAATTGTCACATTTTTTCCCTGGGAGACATCCCATGGCTTCAATGTCAAAATTTGATTCTACCAATGAGCGAATGAGAAACCTCTATCACCGAAGAAGTGAAGCAAATAGTAATGGTTCGGACAAAAAGCAATATGAACTAGACCTTGGCCGCATATTACGTGGGGAAGACAACCGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGAACAAATGCAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAGATTATTCCATTTCATCAGGCATTCAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCTTCACTAGCATATGCCCGAATTCAGGGAAAATCTGCTTTGATTGCTCATTTCCAGAATTCAAGCTTGATGAACGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCTAATGCTGGGGATCCGGAACCCTTCCCCATGGGTACCAACATTAGATTGAGACCTGGAAAATCTCGCACTTCTGGTAATGAGGAAAATCGCAGCCAAGAGAGTCCTTCAACTATGGCAAGTGGTGAGGAGTCTACTAATGGAATGGATTCTTCAAGAAACTCGGACTA 2795 0.42 MHFEIMDQRGASASPHFFEDISFRSERDVGLQKPKPNLDSYQQGKNGIVASQDSILNVSSPQETSMKTGLPMSHMVLSGSITEKPASSSYGLIGNKIVTDVASRESSLFSSSLSEIFNQKLRLMGNDVLSHQPLAVGSPPDKGPYVPLEEIGAETIGSLLPDEDDLFSGVIDELGHNVHARASDDLEDFDLFSSGGGMELEGEEHLSSGKRIVGLDGDSVYFGGSKGKLPFGGQPSRTLFVRNINSNVEDSELKALFEQYGEIRTTYTACKHRGFVMISYYDLRAAQSAMKALQNRSLRSRKLDIHYSIPKINAPEKDISHGTLVLSGLDSSVSNHKLHQIFRFYGEVKEIYETPELYHHKFIEFYDVRAAEAALHALNRSDIAGKQIKLEPGHPRGATCLMQQSQKGHDELDLGQSLCDNSLRQKAISPGLGCLDNESNQGFQSAIGLPMNAFTDNAFSHANSGIQNAVRGASAGKASAVPESSNFADAMKFACVPRFHPHSFPEYHDGLANGNPYSFPSTISNMAGNISTGVTEGSDSRHIQGIGSTGSLMEFNGGGNGSHPRPGLYHMWNSNLHQQSPSSPMLWQKAPSFANGACAPSLPRMPNFPRTPPHMLRASHIEHHVGSAPVVTASPWDRKYSYLGESTEASGFHLGSLGSTGFPRSWQLHPPDFASQNMLSHVGGNGTEFMPNAGQSSPNQLSHFFPGRHPMASMSKFDSTNERMRNLYHRRSEANSNGSDKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRLRPGKSRTSGNEENRSQESPSTMASGEESTNGMDSSRNSD 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01573 930 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 83 924 - -
Bva06g01573 930 CDD RRM1_MEI2_like 236 311 IPR034453 -
Bva06g01573 930 MobiDBLite consensus disorder prediction 869 930 - -
Bva06g01573 930 SMART rrm1_1 323 391 IPR000504 GO:0003723
Bva06g01573 930 SMART rrm1_1 238 306 IPR000504 GO:0003723
Bva06g01573 930 SMART rrm1_1 760 836 IPR000504 GO:0003723
Bva06g01573 930 CDD RRM3_MEI2_like 761 846 IPR034454 -
Bva06g01573 930 SUPERFAMILY RNA-binding domain, RBD 760 844 IPR035979 GO:0003676
Bva06g01573 930 SUPERFAMILY RNA-binding domain, RBD 235 396 IPR035979 GO:0003676
Bva06g01573 930 Gene3D - 230 320 IPR012677 -
Bva06g01573 930 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 83 - -
Bva06g01573 930 PANTHER RNA RECOGNITION MOTIF-CONTAINING 83 924 - -
Bva06g01573 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 389 IPR000504 GO:0003723
Bva06g01573 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 303 IPR000504 GO:0003723
Bva06g01573 930 Gene3D - 321 412 IPR012677 -
Bva06g01573 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 395 IPR000504 GO:0003723
Bva06g01573 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 310 IPR000504 GO:0003723
Bva06g01573 930 MobiDBLite consensus disorder prediction 903 930 - -
Bva06g01573 930 Pfam RNA recognition motif 2 758 854 IPR007201 -
Bva06g01573 930 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01573 Bva-Chr6 11250487 11257991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01573 234 392 Eukaryotic Initiation Factors Gene Family AT1G49760 22.024 5.01e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01573 - - gmx:100797893 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01573 06 11250487 11257991 Bva05g00187 05 912624 920177 ECH
Bva06g01573 06 11250487 11257991 Bva06g01573 06 11250487 11257991 ECH