Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01564 ATGGCATCATCAGAGGTATCAATCAAGGGAAATTGTATGAACGGAAAAGGGGAAAGCTATTCGTCTGGCTACAACAATCATAACGATGCTAGAAACGCTTTGGAGGGTCAGAATGCTCATTTAACAGCCAGAAAAGACGCGGAAGCTGCGCTTTACAGGGAGCTATGGCACGCCTGTGCTGGTCCCCTTGTCACAGTACCCCGGGAAGGAGAACGGgtcttttattttcctcaGGGACATATCGAGCAGGTGGAGGCTTCTACAAATCAGGTGGCGGACCAGCACATGCCCGTATACAATCTCCCATCCAAAATCCTTTGTCGGGTGATCAACGTGATGTTGAAGGCTGAGCCGGACACTGATGAGGTGTTTGCCCAGGTGACGTTGCTTCCCGAATCCAATCAAGATGAAAACGCTGTGGAGAAAGAGCCACCACCACAGCCGCCCCCACGCTTTCACGTGCATTCATTCTGTAAAACTCTAACGGCCTCGGATACGAGTACCCATGGTGGGTTTTCAGTGCTTAGACGACATGCTGATGAATGCCTTCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAATTGGCGGCGAAAGATCTGCATGGCAACGAGTGGAGATTCAGGCATATATTTCGGGGTCAACCGCGTAGGCACTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTTGTAGCAGGGGACGCATTCATATTTCTAAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGCTAATGTTCCATCCTCGGTCATCTCCAGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCATGGCATGCCATCTTGACAGGGACCATGTTCACTGTTTATTACAAGCCTAGGACAAGTCCGGCTGAATTTATTGTTCCTTATGAGCAATATATGGAGTCTCTTAAAAATAGCTATACCATAGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCTGAGCAGAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGACTCCAAAAGTTGGCCAGAATCCAAATGGAGATGCCTCAAGGTGCGATGGGATGAAACATCTAACATACCTCGTCCCGAGAGAGTTTCTCCTTGGAAAATAGAGCCAGCTCTTACTCCTCCTGCGCTGAATCCTCTTCCAATGCCCCGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCGTCCCCTGACTCCTCTGTTCTTACTCGAGAAGCCTCTTCTAAAGTAAGTGTAGACCCTTTGCCAGCTGGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAGAGTAACGAGTCAGAAACTGCTGAAAAATCTGTTGTTTGGCCACCTGCGCTAGATGATGAAAAGATTGATGTGGTTTCTACTTCAAGGAGGTTTGGGTCGGAGACCTGGATGTCAATGGGGAGGCATGAACCAACATATTCAGATTTGCTTTCAGGCTTTGGAGTCAGTGGAGATCCTTCTCATCCGTCTTTGATTGATCAAACTACTCCTTTGGCTAGGAAACATTTGATGGATCaggaaggaaaaattaatGTGCTGGCCAGTCCATGGCCTGTAATGCCCTCTAATCTATCACTTAATCTCTCAGACTCTAATACGAAAAGTACTATGCAAGGTGGTGATGTAACGTACCAAGGTAGAGGGACTGTGAGGTTTGGTGCATTTGGGGACTACCCTGTTCTTCATGGTCATAAAATTGATCATCCGCATGGAAGCTTATTGATGCCACCTCCAACTCCATATGAGAGTCCCCAATCAAGAGAGCTGATGACCAAACGAATGGCAGCAAAAACAGGCCAGGCTCTCAAACCAAAAGACGGAGACTGTAAGCTGTTTGGCATCTCACTTATCAGTAACCCCGTTACACCAGACCTATGTGTATCTCGGAGAAATGTAGCAAGTGAGTCAGCCGCACAAGCACATCTTACGTCAAATCAACCTCGTGTTTCTGAAAGTGATGAAAAGTCAGAACAATCGAGGGGCTCCAAGTCAGCAGATGTTATAGTTGCTATTGATGACAATGAGAAACCAGTACATAACTGTCAGCCACATCTGAAAGATGTTCAAGCCAAACAGCCTGGTGGCTCGCCTAGAAGTTTCACTAAAGTTCATAAGAAGGGGATCGCACTTGGCAGGTCGGTGGACCTTACAAAATTCAACAACTATGATGAATTAGTCTCTGAATTGGATCGGCTGTTTGAATTTGGAGGTGAACTGATGTCTCCTTCAAAGGAATGGCTTATTGTCTACACTGATAATGAGGGGGACATGATGCTCGTGGGGGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAGATTTATATCTACACGAAAGAGGAGATTCAGAAAATGAGCCCTGATTTGATTTCCGTAGCTTCCAGATTTCCAGGCTGGTA 2486 0.4678 MASSEVSIKGNCMNGKGESYSSGYNNHNDARNALEGQNAHLTARKDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYNLPSKILCRVINVMLKAEPDTDEVFAQVTLLPESNQDENAVEKEPPPQPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYEQYMESLKNSYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKSWPESKWRCLKVRWDETSNIPRPERVSPWKIEPALTPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPAGGFPRVLQGQEFSTLRGNFAESNESETAEKSVVWPPALDDEKIDVVSTSRRFGSETWMSMGRHEPTYSDLLSGFGVSGDPSHPSLIDQTTPLARKHLMDQEGKINVLASPWPVMPSNLSLNLSDSNTKSTMQGGDVTYQGRGTVRFGAFGDYPVLHGHKIDHPHGSLLMPPPTPYESPQSRELMTKRMAAKTGQALKPKDGDCKLFGISLISNPVTPDLCVSRRNVASESAAQAHLTSNQPRVSESDEKSEQSRGSKSADVIVAIDDNEKPVHNCQPHLKDVQAKQPGGSPRSFTKVHKKGIALGRSVDLTKFNNYDELVSELDRLFEFGGELMSPSKEWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYTKEEIQKMSPDLISVASRFPGW 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01564 828 MobiDBLite consensus disorder prediction 389 407 - -
Bva06g01564 828 MobiDBLite consensus disorder prediction 665 692 - -
Bva06g01564 828 Gene3D - 723 815 - -
Bva06g01564 828 Pfam AUX/IAA family 768 815 IPR033389 -
Bva06g01564 828 Pfam AUX/IAA family 716 762 IPR033389 -
Bva06g01564 828 CDD B3_DNA 155 257 IPR003340 GO:0003677
Bva06g01564 828 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 820 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva06g01564 828 SUPERFAMILY DNA-binding pseudobarrel domain 153 286 IPR015300 -
Bva06g01564 828 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Bva06g01564 828 Gene3D - 320 390 - -
Bva06g01564 828 Gene3D - 154 259 IPR015300 -
Bva06g01564 828 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva06g01564 828 SUPERFAMILY CAD & PB1 domains 725 803 - -
Bva06g01564 828 SMART B3_2 157 259 IPR003340 GO:0003677
Bva06g01564 828 MobiDBLite consensus disorder prediction 386 430 - -
Bva06g01564 828 MobiDBLite consensus disorder prediction 409 424 - -
Bva06g01564 828 PANTHER AUXIN RESPONSE FACTOR 2 35 820 - -
Bva06g01564 828 ProSiteProfiles PB1 domain profile. 726 819 IPR000270 GO:0005515
Bva06g01564 828 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01564 Bva-Chr6 11184714 11189681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01564 1 823 B3 DNA Binding Superfamily AT5G62000 65.489 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva06g01564 AUX_IAA 1.8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01564 - - gmx:100815956 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00202 08 980669 984870 Bva06g01564 06 11184714 11189681 BWGD
Bva06g01564 06 11184714 11189681 Bva05g00255 05 1242180 1244552 BWGD
Bva06g01564 06 11184714 11189681 Bva06g01564 06 11184714 11189681 ECH