Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01563 atgatGTCTAGAGTAAACGGAGTTGCTTGGATTGATGACAGAGAAGATGACGActctgcttctgcttcatGGGCAAGAAGCGCCAAGGCCAACATCAACAGCCACAgcgagaaaaatatttctggTTTCCTAGAGAATAAGGACGACATGGGTTCTCTGTGTACTTATAAACCCATGCTTGAGGTTGATGAGGAATGGTATATGACGAATAACAGTATCCAAAATCACCCAGATATGAGAGATATCACTTTCTCACCCAACTTTGCTGACCCAGATAGTCTATTGATTCACCCAGTGGATTCGTCCTCTTCTTGTTCTCCATCTCCTTCTGTGTTCAACAATATCGACCCATCTCATGTCCAGTACTTTCTGCCTCCCAAATCCACTTTGTCTTCTCTCCTCCATGTCGTCCCGAGCAACCCTTTAGAACATGGCTTTGATATGGGTTCCGATGTCGGGTTGCTTGGTCCTCAAGCTTCAAGTTCATCAGCAACGCCAAATAGAGGAGGTGCCCTTATTGGAGGCTTCACAGATATGAGCTCAAATAACCAGGTTAGCCTCCCTAACTTATCCTCAGATCCCCAAATATCAATGACGCGCATGCCCCAATTGCCCGAAAGCAGTGACAGCTTTACGGGTTTTAGGAGTTTTGAGGATGTTTCTGGAAAGGCGTTGTTTTTAAAACGGCCCCAGATTTTGAGACCCCTTGAATCGTTACCTCCTTCGGGAGCACCGCCTACTCTTTTTCAGAAGAGAAGAGCACTTCGGAAAAATTTGACAGATGACAAGGGCAATGTGGGAGGTTTGGGTTCGGAAGGTGTTGCGGAACTAAACATAATTGAGAGAGATTGGGGCAAGTGCGAAACTGAAGAATTGaaagataagaaaaggaagatgaGTAATGGGGAGGAATTGGAAGATGCCAGTTTAGTTGGGTCAGGGTTGAATTATGATTCAGATGACTTTACTGAGACTAATAAGGCAGAAGAGAATGACAAGAATGGTGGAAATCGCTCAAATGCCAACAGTACGGTCATCGGTGGCGGTGGGGATCagaaggggaagaagaagGGAATGCCTGCAAAGAATTTGATGGCTGAACGCCGGCGGCGGAAGAAACTCAATGATCGATTATATATGCTGAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATCCTCGGGGATGCAATTGAGTATTTGAAGGAACTTCTGCAGAAAATCAATGACCTTCATAACGAATTGGATTCATCACCTGCTAGCTCCTCTATCACACCCGTCTCAAGCTTCCATCCATTGACACCTACCCCATCTTCCCTATCAAACCGCATAAAGGAAGAACTATGCCCCTCCTCATTGCCAAGCCCAAATGGCCAACCTGCAAGGgTTGAGGTTTGGTTGCGTGAAGGAAGAGGTGTAAATATCCACATGTTTTGTGGGCGGAGACCTGGTCTCCTGCTCTCTACAATGAGGGCTTTGGATAACCTTGGGTTAGACATCCAGCAAGCTGTTATTAGCTGTTTCAATGGATTCGCTATGGATATCTTTCGAGCTGagCAATGCAAGGATGGTCAGGATGTCCAGCCGGAGCAAATCAAAGCTCTGCGATTGGATTCAGCTGGTTTCCATAGCAATAGCTTGATCTG 1655 0.4393 MMSRVNGVAWIDDREDDDSASASWARSAKANINSHSEKNISGFLENKDDMGSLCTYKPMLEVDEEWYMTNNSIQNHPDMRDITFSPNFADPDSLLIHPVDSSSSCSPSPSVFNNIDPSHVQYFLPPKSTLSSLLHVVPSNPLEHGFDMGSDVGLLGPQASSSSATPNRGGALIGGFTDMSSNNQVSLPNLSSDPQISMTRMPQLPESSDSFTGFRSFEDVSGKALFLKRPQILRPLESLPPSGAPPTLFQKRRALRKNLTDDKGNVGGLGSEGVAELNIIERDWGKCETEELKDKKRKMSNGEELEDASLVGSGLNYDSDDFTETNKAEENDKNGGNRSNANSTVIGGGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLHNELDSSPASSSITPVSSFHPLTPTPSSLSNRIKEELCPSSLPSPNGQPARVEVWLREGRGVNIHMFCGRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKDGQDVQPEQIKALRLDSAGFHSNSLI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01563 551 Gene3D - 352 421 IPR036638 GO:0046983
Bva06g01563 551 Coils Coil 397 417 - -
Bva06g01563 551 PANTHER BHLH TRANSCRIPTIONAL FACTOR 99 547 - -
Bva06g01563 551 CDD bHLH_AtAMS_like 361 426 - -
Bva06g01563 551 Pfam Helix-loop-helix DNA-binding domain 365 407 IPR011598 GO:0046983
Bva06g01563 551 MobiDBLite consensus disorder prediction 291 359 - -
Bva06g01563 551 CDD ACT_UUR-ACR-like 478 539 - -
Bva06g01563 551 SMART finulus 364 413 IPR011598 GO:0046983
Bva06g01563 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 358 407 IPR011598 GO:0046983
Bva06g01563 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 423 IPR036638 GO:0046983
Bva06g01563 551 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 99 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01563 Bva-Chr6 11180699 11183833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01563 46 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 48.193 8.61e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g01563 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01563 - - tcc:18605190 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01563 06 11180699 11183833 Bva05g00195 05 966350 967685 ECH
Bva06g01563 06 11180699 11183833 Bva06g01563 06 11180699 11183833 ECH