Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01555 ATGGCAGCTTTTTCATACCAATATCATCCTTTACTCGTTGACCCAGCACTCTTGCCCAATACTTTTAAGCTCTCAGTTTTCTCTGACCATGCGCATGCTAACACAGTTCCTTCCTCTCAATTCTACCCAGCATCAGAGCCTCTTCTGGAGCCATCTATTAATGTTACAAATCATGAAACTAGCTGTGTTGATCAAAGCTCTAAGATTGCCATAAGTGACAATGAGCCTTCTTTCGTGACCAAAAACCAGAGTCCTGAAACCTCCATGGTGGTGGATAAGCTTGAAACAGGAGAGCAGGTTACTCAGAAGGTGACTCCTGtgcaaaagagaagaagaaacagaaacagaaacagaaacgGGGGTTCTCCCCAGTCGTCTAAGAACGCAACAGAAGGGAGAAACAAGAAACAGAAGAGGAACAATGGTGGGGTGGAAGAAGGGGACAAGGCAAAAGCAGAGAAGAAGAATCAGAAGAAAGCTGCCGAGGAGCCCCCAACGGGTTATATCCACGTCAGAGCGAGAAGGGGTCAGGCTACTGATAGCCACAGCTTAGCTGAAAGGgtaagaagagaaaaaataagtgcGAGGATGAAGATGTTGCAGCGACTAGTGCCAGGTTGCGACAAGGTAACTGGAAAGGCCCTCATGTTGGATGAAATAATCAACTATGTTCAGTCATTGCAGAATCAAGTAGAGTTCCTGTCAATGAAACTTGCTTCAATAAATCCCATGTTCTATGATTTCTCAATGGACATAGACAACCTTATGGTCAGGCCAGAGAAATTGAATAGCTTGGCATCAGCACCACCATCTATGCCACAATGCAGCCCAAACCAGGTCGCAACTTTTGCTGATACAACCACCATTACCACCACCACTAGCTTTCCTGCTGCTAATGACTATCTTCTGGATGATTCTGCTTCGATTTTACTTCAAGCACAGAGGTCCAATGTTTTTACTGAGGATTGTGGTAGTCAGTTTTGGGAGGTGGAAGAACAGAGACAGAAGCTCCTTAATTCATATGGGTTCAGCGACAACTTATGttccttaaatta 1055 0.4218 MAAFSYQYHPLLVDPALLPNTFKLSVFSDHAHANTVPSSQFYPASEPLLEPSINVTNHETSCVDQSSKIAISDNEPSFVTKNQSPETSMVVDKLETGEQVTQKVTPVQKRRRNRNRNRNGGSPQSSKNATEGRNKKQKRNNGGVEEGDKAKAEKKNQKKAAEEPPTGYIHVRARRGQATDSHSLAERVRREKISARMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASINPMFYDFSMDIDNLMVRPEKLNSLASAPPSMPQCSPNQVATFADTTTITTTTSFPAANDYLLDDSASILLQAQRSNVFTEDCGSQFWEVEEQRQKLLNSYGFSDNLCSLN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01555 351 MobiDBLite consensus disorder prediction 131 161 - -
Bva06g01555 351 MobiDBLite consensus disorder prediction 74 106 - -
Bva06g01555 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 244 IPR036638 GO:0046983
Bva06g01555 351 SMART finulus 183 233 IPR011598 GO:0046983
Bva06g01555 351 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Bva06g01555 351 MobiDBLite consensus disorder prediction 74 185 - -
Bva06g01555 351 Coils Coil 350 351 - -
Bva06g01555 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Bva06g01555 351 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 351 - -
Bva06g01555 351 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 351 IPR024097 GO:0006355
Bva06g01555 351 CDD bHLH_AtBPE_like 167 252 - -
Bva06g01555 351 Gene3D - 174 246 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01555 Bva-Chr6 11130917 11133510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01555 40 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 46.964 8.63e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g01555 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01555 - - gmx:100806696 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01555 06 11130917 11133510 Bva06g01555 06 11130917 11133510 ECH