Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01523 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGAGTGAACTAGAGCAAGCAACTTTGCCCAGCTTAGAAACAGTTGGTGGGTCAAGTAGATTTGGAGTTCATAGAAGCAAAGGGGAATTTTCAGTTGATTTGAAGCTTGGTCAAGTGGGGAATTCAGGCACTGATTCAGTGGCCAACTGGAAAGACCATTTTGGAGTCTCAAAAGTAGCATCTACCCCTTCATCAGGTTCGTCCAAGAGAGCACGAGCGATCAACAACGGAACCCAGATGGTGTCATGCCTTGTGGATGGGTGCAATTCAGATCTCAGTAATTGTAGAGATTATCACAGGCGTCATAAGGTCTGCGAAATCCACTCCAAGACTCCAGAGGTCACAATTAATGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCTCTAGAGGAATTTGAcgaaggaaaaagaagctgTAGGAAACGCTTAGATGGACATAACCGACGAAGAAGAAAGCCTCAGCCAGAGCCTCCCATGCGATCTGGTAGCTTTTTGTCCAATTACCAAGGTGCTCAGTTGTTGCCCTTCTCAAGTTCACACGTGTTCCCTTCCACTGCTGTGGTGAACCCTAGTTGGAGTGGAGTTGTGACTTCGTGCACAGATGCAGCTAGGCTCCAAAGCCAAAGCCAACACCAACAAGTGCATTTGGTTGATAAACAAGAGCTGTTTCTTGGATCATCTCCTACCGCCAGCAGCTACAAAGAAGGGAAACAACTGGCATTCTTACAAGGTGATAATCCAAGAGTGAACAACCAAAACCCACctcttgctgctgctgcttctgTGTGTCAGACGCTTCTCCGGAGCAGCCCTTTGTCTGAAAGCAATGGCATTGGCAGTGGGGTTAGAAGCAAGATGTTGTGTGATAGTGTAACAAGTTCAGTTCAGGACCCTCACTGTGCTCTCTCTCTTCTGTCATCACCTCATACGCACACAACTGGGAATGGTTTAAACCAAATGGTGCAGCAGCCCTTAGGACTCAGCCTTCACGATAACAACTTAGACTCCGTCGACCAAGTTCTGGTTTCCAATGCCACCGATACAAGTGTTCATTGTCCACCCATGTATGGATCCCAGGGCCAGGGGAGTGAAACCCCACACCCATTTCCCTTTCATTGGGAATa 1169 0.4577 MDWNLKAPSWDLSELEQATLPSLETVGGSSRFGVHRSKGEFSVDLKLGQVGNSGTDSVANWKDHFGVSKVASTPSSGSSKRARAINNGTQMVSCLVDGCNSDLSNCRDYHRRHKVCEIHSKTPEVTINGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPPMRSGSFLSNYQGAQLLPFSSSHVFPSTAVVNPSWSGVVTSCTDAARLQSQSQHQQVHLVDKQELFLGSSPTASSYKEGKQLAFLQGDNPRVNNQNPPLAAAASVCQTLLRSSPLSESNGIGSGVRSKMLCDSVTSSVQDPHCALSLLSSPHTHTTGNGLNQMVQQPLGLSLHDNNLDSVDQVLVSNATDTSVHCPPMYGSQGQGSETPHPFPFHWE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01523 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 389 - -
Bva06g01523 389 SUPERFAMILY SBT domain 92 172 IPR036893 GO:0003677|GO:0005634
Bva06g01523 389 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Bva06g01523 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 389 IPR044817 GO:0003677
Bva06g01523 389 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Bva06g01523 389 Pfam SBP domain 94 167 IPR004333 GO:0003677
Bva06g01523 389 MobiDBLite consensus disorder prediction 156 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01523 Bva-Chr6 10956732 10959874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01523 1 389 SBP-box Gene Family AT5G50670 42.857 1.93e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva06g01523 SBP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01523 - - gmx:100806507 493.812