Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01520 ATGGGGAGGGGGAAAGTGGAGCTTAAGAGAATAGAGAACCCAACAAGTAGGCAGGTAACTTTCTCAAAGAGGAAAAATGGGCTGATTAAGAAGGCATTTGAGCTCTCCGTCCTATGCGATGCCGAAGTTGCCCTTGCCATCTTCTCTTCCTCCGGAAAACCTTATAACTTTGCTAGCCACGACATGCATGGGACCATTTCCAGGTACCGTCAAGAAATAGGAATGCCCTACTCCATTGTCTCTGGCTTAGGAACCATGGAGACTTGGAGGAGTGAAATGGACGAGTTAAGGAGAACAGTAGGCAACTTGGAAACAAGACTCAAGCACTTAGCAGGAGAAGATCTGTCGTCGTTGGGTATGAAAGAATTGAAACAGCTAGAACGACAGCTCAAGACTGGGGTTCAACGCATTCATTCTCGAAAGAGACGCCTCATTTCAGAGAACGCGAACGTGCTCAGAAGAAGGCTTAGAGTCTTGCAAGAGGATAACACTCATCTTCACAAAAGACTGAAAGAATTGGATAGCCTAAATGCAAGCTCCAGTAATCTTACTGGAGTGTGGCCCTACGATGCATTTCAGAGGATCGTCGAGGATGAAGGCCCGGCTTTGATGTA 614 0.4674 MGRGKVELKRIENPTSRQVTFSKRKNGLIKKAFELSVLCDAEVALAIFSSSGKPYNFASHDMHGTISRYRQEIGMPYSIVSGLGTMETWRSEMDELRRTVGNLETRLKHLAGEDLSSLGMKELKQLERQLKTGVQRIHSRKRRLISENANVLRRRLRVLQEDNTHLHKRLKELDSLNASSSNLTGVWPYDAFQRIVEDEGPALM 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01520 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva06g01520 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva06g01520 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva06g01520 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva06g01520 204 Coils Coil 86 113 - -
Bva06g01520 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva06g01520 204 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bva06g01520 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
Bva06g01520 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva06g01520 204 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01520 204 PANTHER - 1 182 - -
Bva06g01520 204 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01520 204 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bva06g01520 204 Gene3D - 14 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01520 Bva-Chr6 10939573 10941365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01520 1 191 MADS-box Gene Family AT3G58780 42.132 4.96e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva06g01520 K-box 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01520 K09264 - dcr:108226624 251.521