Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01457 ATGGAGCCCTCTGAATATGATTCCAATGTCATTTCGAATTCCAGCAAAGACCGAGAATTGGGATTTCAGCCGGCACCTTCTTCCCCCAGTCCCGATCACGATTGTAAAACGTTAGATCTTAATCCCGTGGCTGAGGTCGATGTACTTCATGGGGAGCTTCAGGACAAGTTGGATTTGAAAGATAAGGAGGAGGAACCCGAGGCCGGGAAGAAAGATTCCGAATTTGATGATGGTCAGCAAGTAAGTGTTCAAGAGGGTGCTGAAGAATCTGGTAACGGAGATGGGTGGGATGAGGATAACAGCAATTGGAATGGAAATGAGAGCAATAATTGGAATGAGCATGTGAAAGAGACTGAGAATGATTGGGTGGTTAGAGATGTCGATGTAACTGTCGATGATGAGGAGGAGAAGAAGGACGAGAGAAGCAGCGGTAGAACTCACCACTACCCAGTGAGGCCCGAAGCTGAAGATTGTGCATTCTATCTAAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAGGAGGAAAAATCAGGCTGTTAAGGAGAAAGCAGGGGAACGAGATGAATCAGCAGAAAGGCAGGGACAGGCAGAATGCAAGTATTATCTAAGGTCGGGGGGTTGCAAGTTTGGAAAAGCTTGTAAGTATAACCACACAAGAGGAAAGTGTTCATCAACCACAATTCTAGAGCTTAACTTTCTCGGCTTGCCTATTCGTCAGGGGGAGAAAGAGTGCCCCTATTACATGCGTAATGGTTCTTGCAAGTTTGGAGCTAACTGCAGGTTTAATCACCCTGACCCTACAGCTGTTGGAGGAGGTGATCCTCCTTCTGGATATGGTAATGGCGGGCACATTTCATTACATGGTGCATCACAACCGTCTGTACCCTTGTGGTCTTCTCCAAGACCAGTAAATGAGGCTGCTCCTTTTGTGCCAATGATGATTTCACCTACACCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCACCTGTCTACCTGTCTGAGAGGAGTATTCATCCACCTTCTACGTATGTCACGAACAACCCAGCCATTGAAACAAATGTTTATATTCATCATCAAAAGCAGATGCAAGTTGAAGAGTTTCCAGAAAGGCCCTGTGAACCTGAATGCGCTTACTTTTTGAAAACTGGGGATTGCAAGTTTAAATCGAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATCACCTCCTTGTACCCTCAGTGACAAGGGTCTTCCTTTAAGACCTGACCAGAATGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATACACCCAGCACCCCCCAGTATTCCTGTACTTGATCAGCAATCCTCCTTCCCCAACTCTTCTGATGTAGAAATGGGTGGTCTGGTTGGAAGTGGAGGTGCAAATGATTTGGCATTTCAGCAAATTGTATA 1490 0.4517 MEPSEYDSNVISNSSKDRELGFQPAPSSPSPDHDCKTLDLNPVAEVDVLHGELQDKLDLKDKEEEPEAGKKDSEFDDGQQVSVQEGAEESGNGDGWDEDNSNWNGNESNNWNEHVKETENDWVVRDVDVTVDDEEEKKDERSSGRTHHYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPVRRKNQAVKEKAGERDESAERQGQAECKYYLRSGGCKFGKACKYNHTRGKCSSTTILELNFLGLPIRQGEKECPYYMRNGSCKFGANCRFNHPDPTAVGGGDPPSGYGNGGHISLHGASQPSVPLWSSPRPVNEAAPFVPMMISPTPGVSPQSSEWNGYQAPVYLSERSIHPPSTYVTNNPAIETNVYIHHQKQMQVEEFPERPCEPECAYFLKTGDCKFKSNCKFHHPKNRIARSPPCTLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPIHPAPPSIPVLDQQSSFPNSSDVEMGGLVGSGGANDLAFQQIV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01457 496 ProSiteProfiles Zinc finger C3H1-type profile. 427 455 IPR000571 GO:0046872
Bva06g01457 496 MobiDBLite consensus disorder prediction 52 78 - -
Bva06g01457 496 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Bva06g01457 496 MobiDBLite consensus disorder prediction 52 149 - -
Bva06g01457 496 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 496 - -
Bva06g01457 496 ProSiteProfiles Zinc finger C3H1-type profile. 152 180 IPR000571 GO:0046872
Bva06g01457 496 SUPERFAMILY CCCH zinc finger 247 272 IPR036855 GO:0046872
Bva06g01457 496 SMART c3hfinal6 427 454 IPR000571 GO:0046872
Bva06g01457 496 SMART c3hfinal6 152 179 IPR000571 GO:0046872
Bva06g01457 496 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Bva06g01457 496 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Bva06g01457 496 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Bva06g01457 496 MobiDBLite consensus disorder prediction 1 38 - -
Bva06g01457 496 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Bva06g01457 496 Gene3D - 193 277 - -
Bva06g01457 496 Gene3D - 380 460 - -
Bva06g01457 496 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Bva06g01457 496 SUPERFAMILY CCCH zinc finger 425 453 IPR036855 GO:0046872
Bva06g01457 496 SUPERFAMILY CCCH zinc finger 151 180 IPR036855 GO:0046872
Bva06g01457 496 MobiDBLite consensus disorder prediction 96 111 - -
Bva06g01457 496 MobiDBLite consensus disorder prediction 1 21 - -
Bva06g01457 496 MobiDBLite consensus disorder prediction 112 149 - -
Bva06g01457 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 271 IPR000571 GO:0046872
Bva06g01457 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 201 224 IPR000571 GO:0046872
Bva06g01457 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 178 IPR000571 GO:0046872
Bva06g01457 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 408 IPR000571 GO:0046872
Bva06g01457 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 430 453 IPR000571 GO:0046872
Bva06g01457 496 Gene3D - 110 190 - -
Bva06g01457 496 SUPERFAMILY CCCH zinc finger 386 410 IPR036855 GO:0046872
Bva06g01457 496 SUPERFAMILY CCCH zinc finger 203 228 IPR036855 GO:0046872
Bva06g01457 496 PANTHER PROTEIN PHOSPHATASE RELATED 11 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01457 Bva-Chr6 10620691 10624903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01457 373 457 C2H2 Transcription Factor Family AT3G02830 41.176 1.26e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva06g01457 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01457 - - gmx:100786894 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00290 05 1413246 1418675 Bva06g01457 06 10620691 10624903 BWGD