Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01450 ATGATGGATGGGCGGCGGCATTCGGTTGATATTCCTATTTCTAAAACTCTAGTAGCACTGAGGAGGGTCAGGTCATTGAGGGATCCGACAACTAATTCTATGAGCAAACTCGCTTCTTTGATTGATAATGCTCACTGGGAAAACAGTTCGAGTAACGGGATTTCTCTGCGGTTCTTGGATTCTTCTCATACCTGTGGTTCTGATGataatgtcattttaaattCAAGGAATTTTGGTTTAAAGGGATTAAGAGAGCAGGATGTTActgattttgaattgaattctgGCCTGTTGAACTCTAAACCGAATTCTTTTGGGATAGCTTGTCATGAAAGGCAACGGGATGATGGAATAAAAGGTGTTTCAGGAAATAAGTCACCAAGTGAGAGCTGTTGTAGCAACCATAGGGGTAAGCGATTGGATTTGGTATGCGTCCAACCTCCCAGTGATAATTTAAACGATGTAGATTCATGTTTTGAAGCAACTTCTGGATCATCACAATCGGGGAGAATAGAGCATTTGAAGATGACTAGAAAGTCTTTACGCAAAAATCAAGGGAAACCATCTGGGGGTGATATTGCAAGCTATGAAGTTAGTCCATGCCTTACTATTGGTGATACTGTGTCTGGCGGTAGTATACGGACAAATATAAATCAAGATGTGGATCCTGTAGATAACATTCACCAGGGATGCGGAATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAGGTCTTTATTCTGATTTTGAAGATCGTCCTTTGATATCTCAGCACATCGATGAGATTGATCTTTATGGACATAGAAGCATGAGACACATTTCTGGTGAAATAAGTCCAAGTTTGGAAACTCCTAGAAGTTTAACTTTGAAGTTCAGACCAAAATCTTTTAGCGATTTGGTGGGACAAAATGTGGTAGCAAGGTCTCTTTTGGGGGCTATCTCTATGGGAAGGATAATGTCGTTCTATCTTTTCCATGGCCCCCGTGGTACAGGCAAGACCTGTGCTGCCAGGATTTTTGCCGCTGCACTGAATTGCCTCTCCCTTGAGGAGCAAAAGCCATGTGGTGTGTGCAGAGAAtgtattttgttcttttctggAAGAAGTAAAGATGTTAAACAAGTGGATTCTGTGAGAATCAATCGTACAGACAAGCTTAAGTCCCTCTTTAAGAATGCTAGCATTCCCCCAGTTTCATCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTGTTACATGGGGAAACATGGGCAAGTCTTTTGAATATTCTAGAGAATCTTTCTCAGCATGTAGTTTTTATGATGATCACTCCTGATTTGGATAAGCTTCCCCGTAGTGCAATTTCCCGGGCGCAGAGGTATCACTttccaaagataaaagatGCTGACATTGCAAGCAGATTGGAGCAAATTTGTGTCGAAGAAGGTCTTGATTTTGAACAGGTTGCTTTGGACTTTATCGCTGCTAAGTCCTGTGGGTCACTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTAGGcaaaaaaatcacaatttcCTTAGCCTACGAGCTTACTGGGGTTGTTTCTGATGACGAATTGCTTGATTTGCTGGATCTGGCATTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAGTTGATGAGATCAAGGATAGATCCTTTACAACTTATATCCCAGCTGGCAAATCTCATTATGGACATTCTTGCGGGTAAAGGTCAAGATGGTGGTTCTGAAGCCAGAAGAAGGTTTTGTAGTAGACATCACTCTGAAACAGAACTGCAGAAACTAAGTCAAGCATTGAGATTACTTTCTGAAACTGAGAAGCAATTGAAAGTTTCAAAGAATCAAACAACATGGCTTACGGTAGCTCTCCTCCAGCTAAGTTCCATTGAAAATTCTTCCGAGGATGCAAATGATACGAAGTTGTGTTTGAGGAATGCATGTAATGGAGATGATGATTTGTGCAGTACATCATCTACGGGGGAGAGCTTGAAGCATCTTGCTACAGGTCTGCGTGATAACAAGTCATATAGATTAGGAGTTCAGGAGGATCAAAAAGGAACACTGAATTCCATATGGCACGAAGCTACAGGGTTATGTAAATCTAGTGGGCTCAAGACATTTCTCAGAAAACGGGGAAAGTTGACTTCGCTTTGCGTTAGTCATGGTGTTGCAATTGCTGAGTTGGAGTTCCACCATCGTGACTATGTGTCTAAAGCTGAGAAGTCATGGAAACTGATTGCCAGTTGCCTGCAATTCATTGTGGGTTGTAACATTGAGCTTAGGATCAATCTTGTATCTTGTAATTCTGATTCCAAGTATGCCAAATTGAAGAGGATGTCATTCAGTTTCTTTAGTTGCTCCCGCAGAATAGATCAGAAATCTTTCTTGTCAAATGAGGGAGGAATTGACTCAGACTATGCTGATTCCACCTCTCAAAAACCCATGATGAAGGATACTTATTCCTCTGATTGTGGATTGCCACCCCGCGAGTGCTGTAAGGGGATGGAAGTCGTAGCAACTTTGAGAAGTAGCGAAGGAAATCTACTAAGCTCAGGGAAAAGACTGTCATGTCAAGAGTCTCCAACGACGTCGGGTAAGGAAGATGGATGCAACTACACACAACTAGTTTCATCAACCCTTGATTCGAATCATCAATCAAAGTGTTTACCTAGAACTCTTTGGCTTCATAAGAAGTTGCATTCTCCagagaaaaattttgatttatctaTCCCCAAGTACAACTATTCTAGCGAGCCCTGTGTTTTCTCCATCAAATCTAACAGCAACAACCCTATCAAGGTCTCTAGAAATGATGAAAGCGCAAGAGTGGATTCAGATTTGCTTTGTTGGAGagtgttaaagaaaaaaatcatcta 2903 0.401 MMDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLASLIDNAHWENSSSNGISLRFLDSSHTCGSDDNVILNSRNFGLKGLREQDVTDFELNSGLLNSKPNSFGIACHERQRDDGIKGVSGNKSPSESCCSNHRGKRLDLVCVQPPSDNLNDVDSCFEATSGSSQSGRIEHLKMTRKSLRKNQGKPSGGDIASYEVSPCLTIGDTVSGGSIRTNINQDVDPVDNIHQGCGISCCWSKSPRFRESGLYSDFEDRPLISQHIDEIDLYGHRSMRHISGEISPSLETPRSLTLKFRPKSFSDLVGQNVVARSLLGAISMGRIMSFYLFHGPRGTGKTCAARIFAAALNCLSLEEQKPCGVCRECILFFSGRSKDVKQVDSVRINRTDKLKSLFKNASIPPVSSRFKVFIIDECQLLHGETWASLLNILENLSQHVVFMMITPDLDKLPRSAISRAQRYHFPKIKDADIASRLEQICVEEGLDFEQVALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLAYELTGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGKGQDGGSEARRRFCSRHHSETELQKLSQALRLLSETEKQLKVSKNQTTWLTVALLQLSSIENSSEDANDTKLCLRNACNGDDDLCSTSSTGESLKHLATGLRDNKSYRLGVQEDQKGTLNSIWHEATGLCKSSGLKTFLRKRGKLTSLCVSHGVAIAELEFHHRDYVSKAEKSWKLIASCLQFIVGCNIELRINLVSCNSDSKYAKLKRMSFSFFSCSRRIDQKSFLSNEGGIDSDYADSTSQKPMMKDTYSSDCGLPPRECCKGMEVVATLRSSEGNLLSSGKRLSCQESPTTSGKEDGCNYTQLVSSTLDSNHQSKCLPRTLWLHKKLHSPEKNFDLSIPKYNYSSEPCVFSIKSNSNNPIKVSRNDESARVDSDLLCWRVLKKKII 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01450 967 Coils Coil 604 624 - -
Bva06g01450 967 Gene3D - 463 525 - -
Bva06g01450 967 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 102 886 - -
Bva06g01450 967 Gene3D - 283 460 IPR027417 -
Bva06g01450 967 CDD AAA 303 453 - -
Bva06g01450 967 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 289 635 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bva06g01450 967 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 102 886 - -
Bva06g01450 967 Gene3D - 526 640 - -
Bva06g01450 967 CDD HLD_clamp_pol_III_gamma_tau 462 525 IPR045085 -
Bva06g01450 967 Pfam DNA polymerase III, delta subunit 305 462 - -
Bva06g01450 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 511 IPR027417 -
Bva06g01450 967 SUPERFAMILY post-AAA+ oligomerization domain-like 532 634 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01450 Bva-Chr6 10577998 10581900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01450 280 592 Core DNA Replication Machinery Family AT1G21690 24.921 4.50e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01450 - - gmx:100819111 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00294 05 1443739 1447716 Bva06g01450 06 10577998 10581900 BWGD
Bva06g01450 06 10577998 10581900 Bva06g01450 06 10577998 10581900 ECH