Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01449 ATGACAAGCCATTCtctcccttttctcttcttgctcttctctcttctcacACCAACCCTCATTTCCTCCTCGGCTGTTCAGGACCCAGAATTGGTTGTCCAAGATGTAAACAGGAAAATTAATGCTTCCATTGCTAGGAGGAACTTGGGGTACCTCTCGTGTGGGACTGGTAACCCCATTGACGATTGCTGGAGGTGTGACCCCAATTGGGAGAAGAACCGTCAAAGGCTAGCTGATTGTGCGATTGGGTTTGGGAAGAATGCCATTGGAGGAAGAAATGGCAAGATTTACGTGGTGACCGACTCCGGCGACGATGATCCGGTGAACCCTAAGCCCGGGACTCTCCGTCATGCCGTGATCCAAGATGAGCCATTGTGGATCATATTTGCTAGGGACATGGTGATTCAATTGAAGGAAGAGCTCATCATGAATTCCTTCAAGACCATTGACGGCAGAGGAGCAAGCGTACACATTGCCGGTGGTCCATGCATTACCATACAGTACGTGACTAATGTTATAATCCACGGTATACACATACACGACTGTAAGCAAGGAGGGAATGCTATGGTGAGGGACTCCCCAAAGCATTACGGGTGGAGAACACTATCGGACGGTGATGGCGTGTCCATCTTTGGAGGAAGCCACATATGGGTGGACCATTGCTCCTTGTCCAATTGCAGGGATGGCTTGATTGACGCCATTCACGGGTCCACGGCTATTACACTCTCCAACAATTACATGACACATCACGATAAGGTCATGTTGTTGGGTCACAGCGACTCATATACCCAAGACAAGAACATGCAAGTCACCATAGCCTTTAACCACTTTGGAGAAGGGCTTGTCCAAAGAATGCCAAGGTGTAGGCTGGGATATTTTCATGTGGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGTAGCACCTGATGACAGATTCAGCAAAGAGGTAACAAAGCACGAGGATGCACCAGAGAGTGCATGGAAGAACTGGAACTGGAGGTCAGAAGGGGACTTGCTGGTAAACGGTGCGTTTTTCACTGCATCGGGTGCCGGGGCATCTTCTAGCTATGCAAGGGCTTCTAGCCTCAGTGCAAGGCCATCTTCGCTTGTCGGTTCGATAACGACCTCTGCGGGTGCACTTAACTGTAGGAAAGGTTCTCGTTGCTG 1220 0.4787 MTSHSLPFLFLLFSLLTPTLISSSAVQDPELVVQDVNRKINASIARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRNGKIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPKHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESAWKNWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTSAGALNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01449 406 PANTHER PECTATE LYASE 4 403 - -
Bva06g01449 406 Gene3D - 57 399 IPR012334 -
Bva06g01449 406 PANTHER PECTATE LYASE 18-RELATED 4 403 IPR045032 GO:0030570
Bva06g01449 406 SMART amb_all 132 329 IPR002022 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Bva06g01449 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Bva06g01449 406 SUPERFAMILY Pectin lyase-like 42 401 IPR011050 -
Bva06g01449 406 Pfam Pectate lyase 141 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01449 Bva-Chr6 10567817 10569858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01449 1 406 Polysaccharide Lyase AT5G63180 80.196 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01449 K01728 - gmx:100101868 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00296 05 1454127 1456213 Bva06g01449 06 10567817 10569858 BWGD
Bva06g01449 06 10567817 10569858 Bva05g00296 05 1454127 1456213 ECH
Bva06g01449 06 10567817 10569858 Bva06g01449 06 10567817 10569858 ECH