Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01437 ATGTCTATCACAAATATACCTGCACTTAAGACCCTCGCAATGGCAGAATCATGCTTACTCTCCTTGCCATCACTCTGTTACTGCAAAACCAAATATCCCAATCTCGCTCCTTCCAAACCCCTTAAGCTCCAGGCCTCTTGCTCTAATTCTTCACTATTTTTACCTTCTTTGTCTCTTAGCAGGAAAACCCATTATTCCTCTATAGTCACATTTGTAGCTCAGACATCGGATTGGGCTCAACAAGGAGAAGACAACACGCTCGccgttgaagaagaagaagcagagcAAGATGAGTCTACGTGGGAAAACGAGGAGGAGGGTGGAGTCGATGCTCGTCTTTCGGATTGGGAGTCTGAGGGTGGAGAAGCAGGTATCGAAGGTAGCCTGAGCGACGGAGAGAGCGGTGAAGATGGGGTTTTTGAGGACAGGGAAGAAGGGGGATTCGTGGAACCACCTGAAGatgcaaaattatttgttgGCAACTTGCCTTATGATGTTGATAGTCAGAAATTGGCCATGCTTTTTGAGCAGGCTGGAACGGTGGAAATTGCCGAGgtAATTTATAATAGAGACACTGATCAAAGTCGTGGGTTCGGATTTGTAACCATGAGTACAGTTGAAGAAGCCGACAACGCTGTTGAGAAGTTCAACCGATATGACTTAGATGGGAGACTGTTGACTGTTAACAAGGCTGCTCCGAGAGGATCACGACCTGAACAACGCCCACGCCCACCTCGTAGCTTTGAACCTGCATTGAGAGTCTATGTTGGGAACTTGCCGTGGGATGTTGACAATGCTCGCCTGGAGCAAATTTTCAGCGAACACGGTAAGGTTGTGAGTGCTCGCATTGTGTACGACAGAGAAACTGGTCGATCACGTGGTTTTGGCTTTGTCACGATGACCAGTGAGACTGAAATGAATGATGCCATTGCTGCTCTCGATGGTCAGAGTTTGGACGGGAGGGCAATTAGAGTGAATGTTGCCGAGGAAAGAACCAGGCGTAGCTCCTTTTG 1013 0.46 MSITNIPALKTLAMAESCLLSLPSLCYCKTKYPNLAPSKPLKLQASCSNSSLFLPSLSLSRKTHYSSIVTFVAQTSDWAQQGEDNTLAVEEEEAEQDESTWENEEEGGVDARLSDWESEGGEAGIEGSLSDGESGEDGVFEDREEGGFVEPPEDAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEADNAVEKFNRYDLDGRLLTVNKAAPRGSRPEQRPRPPRSFEPALRVYVGNLPWDVDNARLEQIFSEHGKVVSARIVYDRETGRSRGFGFVTMTSETEMNDAIAALDGQSLDGRAIRVNVAEERTRRSSF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01437 337 MobiDBLite consensus disorder prediction 105 119 - -
Bva06g01437 337 MobiDBLite consensus disorder prediction 86 104 - -
Bva06g01437 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723
Bva06g01437 337 CDD RRM_HP0827_like 253 329 - -
Bva06g01437 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 226 IPR000504 GO:0003723
Bva06g01437 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 324 IPR000504 GO:0003723
Bva06g01437 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 330 IPR000504 GO:0003723
Bva06g01437 337 SUPERFAMILY RNA-binding domain, RBD 151 246 IPR035979 GO:0003676
Bva06g01437 337 SMART rrm1_1 156 229 IPR000504 GO:0003723
Bva06g01437 337 SMART rrm1_1 253 326 IPR000504 GO:0003723
Bva06g01437 337 PANTHER OS02G0815200 PROTEIN 4 337 - -
Bva06g01437 337 MobiDBLite consensus disorder prediction 86 151 - -
Bva06g01437 337 Gene3D - 240 336 IPR012677 -
Bva06g01437 337 Gene3D - 75 239 IPR012677 -
Bva06g01437 337 CDD RRM_HP0827_like 156 233 - -
Bva06g01437 337 SUPERFAMILY RNA-binding domain, RBD 244 334 IPR035979 GO:0003676
Bva06g01437 337 MobiDBLite consensus disorder prediction 229 248 - -
Bva06g01437 337 PANTHER RIBONUCLEOPROTEIN 4 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01437 Bva-Chr6 10522928 10524993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01437 123 334 Eukaryotic Initiation Factors Gene Family AT3G16380 33.636 4.54e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01437 - - hbr:110672501 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00308 05 1506242 1508840 Bva06g01437 06 10522928 10524993 BWGD
Bva06g01437 06 10522928 10524993 Bva05g00308 05 1506242 1508840 ECH
Bva06g01437 06 10522928 10524993 Bva06g01437 06 10522928 10524993 ECH