Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01410 ATGAACCCTTACGACAATAGATATGCCGATGCGACTTCTTATCGGGAACGTCGGAGTGATCTAGTTGGATCTAAGCTACCAAGGATGCCTTCGGTGGTTGGTGTCGCCAGCTCGAGCTACGGCCGTGGTGGTCCGGTATCTTATGTTCCTCCTCCTGCTCCTGTTGGCTATGGCATAAGTGGAAGAGGAGCTGGAAGTGGTTTCGGATCGGCACCTGTTGCTACGAATTATAACGCACCTCCTCCGTTTGTGCCCCCTCCTGGGGGTTTTGATATTGGTCGTGGCGGTGGGAGCAGCCAAAGAGGCTTTAGTGCTGGCGGTGATTTTAGTGGTAGATTGGGCAATGGCCATGTAAATGGTGGTGATAGGAAAGATGATCTAAGAACTTTTGGTCCTGGAAGAGGTCGTGGCAGAGGTGATAGAGGCAGAGTATTAGGTGCAGGCCGAAGCGGTGGTAGAGGAAGCTTCGGAGGTAGAAGTTCTGGTGGAAGTGGGGGATTTGGCAGTGGCCGAGGAGGTAGATATGGTGGGTCATCCAAAGATGACTTGGATAACATTGCTCTTCCGAGGCAAGATTTCAGGAATTTGGTCCCTTTTGAGAAGAATTTTTACATTGAGAGCCCTTCCGTGCGGGCAATGTCTGATCATGAAGTTATGGTTTACCGTTCGAGTAGAGAGATCACTGTGCAAGGTCATGATGTTCCAAAACCAATTCGGATGTTTCATGAGGCAAACTTTCCTGATTACTGCCTTGAGGTGATTGCGAAATTGGGTTTCGTTGAGCCCACACCAATTCAGGCTCAGGGTTGGCCCATGGCTCTAAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGTTCGGGTAAAACTCTGGCATATCTGCTTCCTGCATTGGTGCATGTCAGTGCACAACCACGATTGGTACAAGGTGAAGGTCCCATTGTCTTAATCCTAGCACCTACTAGAGAGTTAGCCGTTCAAATTCAAGAGGAAGCTGTCAAATTTGCATCAAGAGCAAATATTAGAAGCACTTGCATCTATGGTGGTGCACCAAAGGGGCCTCAAATTCGTGATCTTAAAAGAGGTGTTGAGATTGTTATTGCTACACCTGGTCGTCTTATAGATATGTTGGAAGCTCAGCACACAAACTTGCAGAGAGTAACTTACCTTGTGTTGGATGAGGCTGATCGAATGTTGGATATGGGTTTTGAAcctcaaataagaaaaatcattgcCCAGATTCGACCGGATAGGCAGACACTGTACTGGAGTGCTACGTGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTTCGCAGCCCCTATAAGGTGATTATTGGATCACTAGATCTCAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTCGTGACAGATGTGGAGAAATACAATAGATTGATCAGACTGCTCAAAGAAGTAATGGATGGGAGCCGAATCCTGATATTTATGGAAACCAAAAAGGGATGCGACCAAGTTACAAGACAACTGAGAATGGATGGGTGGCCAGCGCTATCCATTCATGGTGATAAAAACCAAGCCGAGAGAGATTGGGTCTTGGCTGAGTTTAAGAGTGGCAGAAGTCAAATAATGACTGCCACTGATGTTGCTGCACGTGGTCTTGGTAGGATCACTGTGTGTGGGAGTCTTAGAACTATCATATTCAGAGAGGTCATGTTAAACGGATACATGGAGCACAGTTCCATTGATATTGCTGCAATGGTGGTGTACTATTTCTGGGTCCGGTTGACTCATACATGCTTAGTCAATAATTGGATATGGGAGGTGGCAGTGATGGTGAAGCTGCTCCTTATCCCTGCAAGGCTAAGATGTGAAGGACATAAAGTCGTGAGTCCCGCTCTGTCTGCCTTGGCACGTTCAGCTGGTTCTGGTCCGTATgGATCTGTGGGAAACTTTCGCTCCAGAGGACGTGGAGGCTATAGCAATCGGGGTCAAATATCAGGGTCTAATGCCATTCCTCTTGGTTCAAGGAAGCGTTGGTA 2024 0.4674 MNPYDNRYADATSYRERRSDLVGSKLPRMPSVVGVASSSYGRGGPVSYVPPPAPVGYGISGRGAGSGFGSAPVATNYNAPPPFVPPPGGFDIGRGGGSSQRGFSAGGDFSGRLGNGHVNGGDRKDDLRTFGPGRGRGRGDRGRVLGAGRSGGRGSFGGRSSGGSGGFGSGRGGRYGGSSKDDLDNIALPRQDFRNLVPFEKNFYIESPSVRAMSDHEVMVYRSSREITVQGHDVPKPIRMFHEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLVQGEGPIVLILAPTRELAVQIQEEAVKFASRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIIAQIRPDRQTLYWSATWPREVETLARQFLRSPYKVIIGSLDLKANQSINQVVEVVTDVEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSQIMTATDVAARGLGRITVCGSLRTIIFREVMLNGYMEHSSIDIAAMVVYYFWVRLTHTCLVNNWIWEVAVMVKLLLIPARLRCEGHKVVSPALSALARSAGSGSVGNFRSRGRGGYSNRGQISGSNAIPLGSRKRW 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01410 671 Pfam DEAD/DEAH box helicase 263 434 IPR011545 GO:0003676|GO:0005524
Bva06g01410 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 447 IPR027417 -
Bva06g01410 671 Gene3D - 451 581 IPR027417 -
Bva06g01410 671 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 112 548 - -
Bva06g01410 671 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 391 399 IPR000629 -
Bva06g01410 671 PANTHER LD32873P 112 548 - -
Bva06g01410 671 CDD DEADc_DDX5_DDX17 251 445 - -
Bva06g01410 671 Pfam Helicase conserved C-terminal domain 469 548 IPR001650 -
Bva06g01410 671 MobiDBLite consensus disorder prediction 649 663 - -
Bva06g01410 671 MobiDBLite consensus disorder prediction 118 143 - -
Bva06g01410 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 548 IPR027417 -
Bva06g01410 671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 632 IPR001650 -
Bva06g01410 671 Gene3D - 212 450 IPR027417 -
Bva06g01410 671 MobiDBLite consensus disorder prediction 1 26 - -
Bva06g01410 671 SMART ultradead3 258 461 IPR014001 -
Bva06g01410 671 MobiDBLite consensus disorder prediction 95 183 - -
Bva06g01410 671 CDD SF2_C_DEAD 458 548 - -
Bva06g01410 671 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 239 267 IPR014014 GO:0003724
Bva06g01410 671 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 270 445 IPR014001 -
Bva06g01410 671 MobiDBLite consensus disorder prediction 635 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01410 Bva-Chr6 10412618 10416577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01410 236 548 Eukaryotic Initiation Factors Gene Family AT3G19760 34.076 1.72e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01410 K12823 - qsu:112035669 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01410 06 10412618 10416577 Bva06g01410 06 10412618 10416577 ECH