Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01407 ATGGGTCGCCATTCCTGCTGTTTAAagcaaaaattgagaaaaggtTTATGGTCTCCTGAAGAAGATGAGAAACTATTCAATTACATAACCAGATTTGGTGTTGGGTGCTGGAGTTCAGTTCCCAAACTAGCTGGATTGCAAAGATGTGGAAAGAGTTGCAGACTGAGATGGATTAACTATTTGAGGCCTGATTTAAAGAGAGGCATGTTCTCTCAGCAGGAGGAGGATCTTATAATGAGTCTTCATGAAGTTCTTGGCAACAGgtGGGCTCAAATTGCAGCACAATTACCGGGAAGAACAGATAATGAGATTAAAAACTTCTGGAATTCATGTCTAAAGAAGAAGCTATTGAAGCAAGGGATTGATCCAACTACCCACAAGCCTCTGACTGAAGCTCAAAtaaaagaggagaagaaagacATGGAGACACCATCTATGCAAATACCATTTTCTCAAGGACTTCCAACTACAACAGCAACCTTAACCTCCTCACAGGGTTTTGCACTCCTTTTAAATGATTCCAATTTTTACGACGGTGGGCTAACTGAAGCTTCAAGAGAAGTTTTCATGGGCAAGCCAGCTTTGGACCCGTTGTCCTACTTTGAATTCCAAATGGGTGTTACACAATCCGGTTATAATTCAAGTTTGAGTCATTGTCTCTCAGGTCTTAAACCATTTGATCAGAACCATTTGGGAACAAATTCAAGCTATGGGTTCTCTTCAATGCCAAGTTTAGCCAATTCTGATCACAGGAACGTGTCCATGACACAGTTTTCAGATAACAATTCAGCTTCCAAAATCAGTTCATTGTTCATGAACGAGGTGAAAGATAGCTCAAGCAATGGCTCAATTATGAGCACTTATCCAGCAGCAGGGTGTCAGATAAGCAACATGATGGAAAATGCAGGATTCTCATGGGAAGGCGAGAACAAGATGGATTCTTTGTTTCAGTTTCATGTCAATGCCACAAAATCTGAGGAAATCAAGACAACTTCATGGCAACAAGGGCAGCTTCAGACTCACAGTTCCATAGATTTCAATAGCTATCCGTTAACGTCACTGTCAGAGGATCTAACAGGAGCGAATTTTGATGTGTTCCAGCAGATATG 1109 0.3986 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIMSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAQIKEEKKDMETPSMQIPFSQGLPTTTATLTSSQGFALLLNDSNFYDGGLTEASREVFMGKPALDPLSYFEFQMGVTQSGYNSSLSHCLSGLKPFDQNHLGTNSSYGFSSMPSLANSDHRNVSMTQFSDNNSASKISSLFMNEVKDSSSNGSIMSTYPAAGCQISNMMENAGFSWEGENKMDSLFQFHVNATKSEEIKTTSWQQGQLQTHSSIDFNSYPLTSLSEDLTGANFDVFQQI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01407 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva06g01407 369 CDD SANT 70 109 IPR001005 -
Bva06g01407 369 PANTHER MYB TRANSCRIPTION FACTOR 1 365 - -
Bva06g01407 369 CDD SANT 17 61 IPR001005 -
Bva06g01407 369 Gene3D - 11 67 - -
Bva06g01407 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva06g01407 369 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Bva06g01407 369 SMART sant 66 114 IPR001005 -
Bva06g01407 369 SMART sant 13 63 IPR001005 -
Bva06g01407 369 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva06g01407 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva06g01407 369 PANTHER MYB DOMAIN PROTEIN 55 1 365 - -
Bva06g01407 369 Gene3D - 68 145 - -
Bva06g01407 369 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bva06g01407 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01407 Bva-Chr6 10394917 10396626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01407 1 156 MYB Transcription Factor Family AT1G57560 72.436 2.02e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g01407 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01407 K09422 - gmx:100811140 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00335 05 1635853 1637672 Bva06g01407 06 10394917 10396626 BWGD
Bva06g01407 06 10394917 10396626 Bva06g01407 06 10394917 10396626 ECH