Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01402 ATGGCATCATCCAGCTCTTACAATTCTCCCTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGTTGCATCTTTGCACCTTACTTTCCACCTGAAGAGCCCCAAAAATTTGCCAACGTCCACAAAATTTTTGGTGCTAGCAATGTGACTAAGCTCCTTAACGAACTACTTCCTCCCCAGAGGGAGGATGCTGTGAATTCCCTTGCCTATGAAGCAGAGGCCCGCGTGAGAGACCCAGTTTATGGCTGTGTTGGTGCTATCTCTTTCCTCCAAAGACAGGTTCAAAGGCTTCAGAAAGAGCTTGATGCTGCTAATGCTGATCTGATCCGTTATGCCTGCAATGAAATCCCATCTGCATCTCTGCCAGTACCACCACCAATAACTTCAGTTCAACAAATTCCCCAAAGACAAAGATCTATGGAGTTTGGTGGAAGAATTGGTAATAATGAAGGATCAGGTGGGTTTTATCGCCAAACTCCTGCCACTTTTGCTCTTCCTTATTCTCTTCCATGGACTGATACCTCTCCAGATGATATTAACGAgggtggaggaggaggaggtaatttgtg 575 0.4348 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPPQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPSASLPVPPPITSVQQIPQRQRSMEFGGRIGNNEGSGGFYRQTPATFALPYSLPWTDTSPDDINEGGGGGGNL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01402 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 188 - -
Bva06g01402 191 PANTHER ELONGATED PETIOLULE 1 1 188 - -
Bva06g01402 191 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Bva06g01402 191 Coils Coil 89 116 - -
Bva06g01402 191 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01402 Bva-Chr6 10368870 10369445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01402 1 113 AS2 family AT5G63090 93.860 9.30e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva06g01402 LOB 8.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01402 - - tcc:18604002 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00338 05 1658504 1660658 Bva06g01402 06 10368870 10369445 BWGD
Bva06g01402 06 10368870 10369445 Bva05g00338 05 1658504 1660658 ECH
Bva06g01402 06 10368870 10369445 Bva06g01402 06 10368870 10369445 ECH