Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01394 ATGCCTGTAAATCCATGGACcctcttcttcctttgcttttttctttcacttccaTACCTTTCTTTTATAGCTTATGCAGTTAACCAGCAAGGGGAAGCTCTTCTTTCATGGAAGGGAACCCTCAATGGATCCCAGGATGTATTGAGTAATTGGGATCCAATGGACGAGACACCCTGTGGCTGGTTCGGGGTTAGCTGCAACTTCAAAAGCGAAGTTGTACAATTAGATCTGAGATATGTGGATTTGCTTGGAAAAGTTCTCTCTAATTTCACCTCGTTGCTTTCCTTGAACAAGCTCGTCCTTACGGGAACAAATCTCACTGGTTCAATCCCAAAAGAGATTGGCACTCTTAGTGAGCTCAGCTACTTAGATTTAAGTGACAATGCCTTGAGTGGTGAAATTCCGAGTGAGCTTTGCTTCTTGCCCAAGCTTGAGGAACTCCACCTGAATTCCAACCAGCTCGTGGGATCAATTCCAGTTGCAATTGGAAACCTCACACAGTTGGACTGGCTGATTATATATGACAATCAACTAAGTGGTGAAATTCCCAGAACCATTGGCAACCTCAGGAACTTGCAAGGGATCAGAGCAGGTGGAAATAAGAACCTTGAAGGTCCTTTGCCACAAGAAATTGGCAACTGTTCCAGTTTGGTCATGTTGGGTCTCGCTGAAACAAGTATCTCTGGTTTTCTTCCACCAACTCTTGGCCTCCTCAAGAAGCTTGACACCCTTGCGATTTACACTACACTCATCTCTGGCCAAATCCCTGCTGAGCTCGGTGACTGTAGTGAACTGCAAAACATTTATTTGTACGAGAACTCCCTCACCGGCACCATACCGAGCAAATTGGGAAATCTTAGAAACCTCAAAAATCTCCTACTATGGCAGAACAACTTAGTTGGCACTATCCCACCGGAGATTGGAAATTGCTACCAGTTATCGGTCATTGACATCTCAATGAATTCGCTCACCGGAAGCATACCCAAAAGTTTTGGAAATTTGACCTCCTTGGAAGAACTTCAACTCAGCGTCAACCAGATTTCCGGCGAGATACCGGCGGAGCTAGGGAACTGTCAGCAGCTAACTCACATCGAGCTGGACAACAATCAAATTACAGGTACAATACCTTCCGAACTTGGAAGCCTTAAAAATCTAACATTACTGTTTTTGTGGCATAACAAGCTGGAAGGAAATATACCATCTTCTCTTTCTAATTGCCAAAACCTCGAGGCCATGGATCTATCCCAGAATGTATTGACAGGTCCTATACCAAAGGGTATATTCGAGCTTAAGAATCTGAATAAACTTTTACTACTTTCAAATAATCTCTCCGGGAACATTCCAGCTGAGATTGGAAACTGCTCATCTTTAATTCGGCTCCGAGCGAGCAACAATAAGCTCACAGGGAACATTCCCCCGCAGATTGGAAATCTGaggaatttgaatttcttggaTCTTGCAAACAACCGAATTGCTGGAGTTATTCCGGAAGAGATTTCAGGCAGCCAGAATCTCACGTTTTTGGACCTACATTCCAACTTGATCGCTGGGAACTTGCCAGAAAGTATGAGCATGCTTGTCTCGCTTCAATTTATTGATGTCTCCGATAACATGATTGAAGGAACATTAAGCCCAAGCCTTGGGTCGCTTGGTTCACTCACGAAACTGGTTCTCGGGAAGAATCGCATATCCGGGTCAATCCCTAGTCGACTCGGTTCTTGTTCCAAGCTGCAGCTTTTGGACCTTAGCAGCAATCAACTTTCAGGAAATATTCCAGGTAGTCTGGGCAATATTCCAGCGCTCGAAATCGCTCTGAACCTGAGCTGGAATCAACTCACTGGCAAGATTCCTCAGGATTTTTCGGAGTTGGAGAAACTTGGAATCTTAGATATATCCCACAACCAGCTCGACGGTGATCTTCAATCTCTTGCTGGCCTCCAAAATCTTGTAGTCCTCAATATCTCATACAACAAATTCTCAGGTCGCGTTCCAGACACGCCTTTCTTTGCAAGGCTTCCTCTAAGTGTGCTCGCAGGAAACCCCTCCTTGTGTTTCTCCGGTAACCAATGCGCCGAAGACGATACCAGACGAACAGGACGCCGGACAAAGGCGGCGCGTATAGCCATGGTTGTCCTGCTATGCACCGCGTGTGCCCTCCTCTTGGCGGCGCTTTACATCGTCATCGCGGCAAAACGACGCGGGGGCCCGGGGCACGATCTCGACCTCGATGGTAGAGATTGCGACATTGAGATGGCCCCACCTTGGGAAGTGACGTTGTACCAGAAGCTCGACCTGTCAATCTCTGACGTGGCACAATGTCTCACACCTGGCAACGTCATTGGGCGGGGACGATCCGGCGTCGTTTACAGGGTGAATCTGCCGTCAGGTTTACCCGTTGCCGTGAAAAGGTTCGGTTCTTCAGATAAATTCTCAACTTTGTCATTTGCATCGGAGATTGCGACATTGGCCCGAATCCGGCATCGGAATATCGTGCGGCTTTTGGGTTGGGCAGCAAACCGGAAAACGAAATTACTGTTCTATGATTATTTACCGAACGGTGATTTAGATACACTGATACACGAGGGGTGCACAGGATTAATCGAGTGGGAGACCCGGTTCAAGATAGCATTGGGCGTCGCGGAGGGCTTGGCTTATTTACATCATGACTGCGTGCCTGCTATCTTGCACCGGGACGTGAAGTCCCTGAACATTTTGTTAGGAGACAGATATGAGCCGTGTTTGGCCGATTTTGGATTTGCTAGACTGGTGGAAGATGATAACGGTGCGTTTTCCGTCAACCCACAGTTCGCGGGTTCCTACGGCTACATTGCACCGGAGTATGCTTGCATGCTGAAGATCACTGAAAAAAGTGATGTATACAGTTTTGGAGTGGTCCTGTTAGAGATAATAACTGGAAAAAGACCCGTGGATGCATCATTCCCTGATGGGCAACATGTTATTCAATGGGTGAGAGAGCATCTAAAGAGCAAGAAGGACCCAGTTGAAATGCTTGATCCCAAGCTTCAAGGCCATCCAGACACACAAATACAAGAGATGCTGCAGGCACTTGGTATTTCTCTCTTGTGCACTAGTAATCGAGCAGATGATCGTCCTACCATGAAAGATGTCGCCGCATTATTGAGAGAAATTCGACACGATCCTCCACCAGGAACTGAGGCCCACAAGCCCGCCGCCAAAAGAACCGAAACTACGTCGTATTCGTCCTCGTCGGTCACACCGTCTCAACTATTGCTCCTCCAAGCCTCGTCTCATTCCTCGTCCCTTGCTTATTCATCTTCTTCAGCAGCAGCAGGTTACCCTTCGGCAAGAAGGGAATA 3338 0.4652 MPVNPWTLFFLCFFLSLPYLSFIAYAVNQQGEALLSWKGTLNGSQDVLSNWDPMDETPCGWFGVSCNFKSEVVQLDLRYVDLLGKVLSNFTSLLSLNKLVLTGTNLTGSIPKEIGTLSELSYLDLSDNALSGEIPSELCFLPKLEELHLNSNQLVGSIPVAIGNLTQLDWLIIYDNQLSGEIPRTIGNLRNLQGIRAGGNKNLEGPLPQEIGNCSSLVMLGLAETSISGFLPPTLGLLKKLDTLAIYTTLISGQIPAELGDCSELQNIYLYENSLTGTIPSKLGNLRNLKNLLLWQNNLVGTIPPEIGNCYQLSVIDISMNSLTGSIPKSFGNLTSLEELQLSVNQISGEIPAELGNCQQLTHIELDNNQITGTIPSELGSLKNLTLLFLWHNKLEGNIPSSLSNCQNLEAMDLSQNVLTGPIPKGIFELKNLNKLLLLSNNLSGNIPAEIGNCSSLIRLRASNNKLTGNIPPQIGNLRNLNFLDLANNRIAGVIPEEISGSQNLTFLDLHSNLIAGNLPESMSMLVSLQFIDVSDNMIEGTLSPSLGSLGSLTKLVLGKNRISGSIPSRLGSCSKLQLLDLSSNQLSGNIPGSLGNIPALEIALNLSWNQLTGKIPQDFSELEKLGILDISHNQLDGDLQSLAGLQNLVVLNISYNKFSGRVPDTPFFARLPLSVLAGNPSLCFSGNQCAEDDTRRTGRRTKAARIAMVVLLCTACALLLAALYIVIAAKRRGGPGHDLDLDGRDCDIEMAPPWEVTLYQKLDLSISDVAQCLTPGNVIGRGRSGVVYRVNLPSGLPVAVKRFGSSDKFSTLSFASEIATLARIRHRNIVRLLGWAANRKTKLLFYDYLPNGDLDTLIHEGCTGLIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKSLNILLGDRYEPCLADFGFARLVEDDNGAFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDASFPDGQHVIQWVREHLKSKKDPVEMLDPKLQGHPDTQIQEMLQALGISLLCTSNRADDRPTMKDVAALLREIRHDPPPGTEAHKPAAKRTETTSYSSSSVTPSQLLLLQASSHSSSLAYSSSSAAAGYPSARRE 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01394 1112 SMART LRR_typ_2 623 647 IPR003591 -
Bva06g01394 1112 SMART LRR_typ_2 382 406 IPR003591 -
Bva06g01394 1112 SMART LRR_typ_2 117 139 IPR003591 -
Bva06g01394 1112 SMART LRR_typ_2 334 358 IPR003591 -
Bva06g01394 1112 SMART LRR_typ_2 141 165 IPR003591 -
Bva06g01394 1112 SMART LRR_typ_2 478 502 IPR003591 -
Bva06g01394 1112 SMART LRR_typ_2 286 310 IPR003591 -
Bva06g01394 1112 SMART LRR_typ_2 550 574 IPR003591 -
Bva06g01394 1112 Gene3D Ribonuclease Inhibitor 199 444 IPR032675 -
Bva06g01394 1112 SUPERFAMILY RNI-like 267 642 - -
Bva06g01394 1112 MobiDBLite consensus disorder prediction 1050 1112 - -
Bva06g01394 1112 PANTHER OS01G0170300 PROTEIN 6 1068 - -
Bva06g01394 1112 SUPERFAMILY L domain-like 27 300 - -
Bva06g01394 1112 Gene3D Ribonuclease Inhibitor 445 693 IPR032675 -
Bva06g01394 1112 SMART serkin_6 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g01394 1112 ProSiteProfiles Protein kinase domain profile. 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g01394 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 1068 - -
Bva06g01394 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672|GO:0006468
Bva06g01394 1112 Pfam Protein kinase domain 778 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g01394 1112 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Bva06g01394 1112 SMART LRR_sd22_2 478 501 - -
Bva06g01394 1112 SMART LRR_sd22_2 502 521 - -
Bva06g01394 1112 SMART LRR_sd22_2 382 411 - -
Bva06g01394 1112 SMART LRR_sd22_2 526 541 - -
Bva06g01394 1112 SMART LRR_sd22_2 623 648 - -
Bva06g01394 1112 SMART LRR_sd22_2 117 149 - -
Bva06g01394 1112 SMART LRR_sd22_2 574 593 - -
Bva06g01394 1112 MobiDBLite consensus disorder prediction 1067 1105 - -
Bva06g01394 1112 ProSitePatterns Protein kinases ATP-binding region signature. 780 802 IPR017441 GO:0005524
Bva06g01394 1112 MobiDBLite consensus disorder prediction 1050 1066 - -
Bva06g01394 1112 SUPERFAMILY Protein kinase-like (PK-like) 764 1049 IPR011009 -
Bva06g01394 1112 Gene3D Phosphorylase Kinase; domain 1 757 849 - -
Bva06g01394 1112 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Bva06g01394 1112 Pfam Leucine rich repeat 552 612 IPR001611 GO:0005515
Bva06g01394 1112 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Bva06g01394 1112 Pfam Leucine rich repeat 479 539 IPR001611 GO:0005515
Bva06g01394 1112 Gene3D Transferase(Phosphotransferase) domain 1 850 1067 - -
Bva06g01394 1112 PRINTS Leucine-rich repeat signature 623 636 - -
Bva06g01394 1112 PRINTS Leucine-rich repeat signature 577 590 - -
Bva06g01394 1112 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01394 Bva-Chr6 10305473 10310333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01394 25 1102 Receptor kinase-like Gene Family AT5G56040 53.818 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva06g01394 Pkinase 4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01394 - - gmx:100778064 1685.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01394 06 10305473 10310333 Bva06g01394 06 10305473 10310333 ECH