Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01392 ATGGTTATCAAAATTGGGGGACAAATAGAGAAGGTGAATGGGAAAGAAATGACATACAATGAGTTTGTGAAGAGATACATGGAGAAGAACCAGCCTGTGGTGCTTACAGGGTTAATGAACGGTTGGAGGGCTTGCAAGGACTGGGTCACCTGTGAGGGCCAACCCAATCTTCAGTTTTTCTCTACGCATTTCGGGGTTTCAAAAGTTCAGGTTGCAGATTGTGGCACTAGAGAATTCACGGATCAGAAAAGGCAGGAAATGAGTGTTTCAGAGTTTATCGAGCATTGGCTATCGAACTCTGCATCACAGTGCAGTAATGAAACTCAAACTCGTAATGATCAGTCCGTGCTGTATTTGAAGGATTGGCACTTTGTAAAGGAATACCCAGAATATTTAGCATACATCACTCCAGTGTTCTTTTGTGATGATTGGCTCAACCTCTATCTTGATAACTACAGAATGCATACTGATCCTGATGCTTACCAAGAAAACTATGAAATATGTTGCTCTGACTACCGTTTTGTTTACATGGGAGTGAAAGGATCCTGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGTTGGTCAGCAAATGTCTCTGGGAAGAAAAGATGGCTTTTTCTAGCTCCTTCTCAGTCTCATCTTGTATTTGACCGgaatatgaaaaattgCGTGTATAATATCTTTGACGAAGTCAGTGAGACAAAATTTCCTGGTTTTAAAAAGGCTATCTGGTTAGAATGTTTGCAAGAAGCAGGTGACATCATATTTGTTCCCAGTGGGTGGTATCATCAAGTTCATAATCTGGAGGATACTGTATCTATAAACCATAACTGGTTCAATGCCTATAGCCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAGGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAACTTCTATGATTTCTTTACTTTCTTAATGTACTTCGCCTTGGCCAACTTGGTCTTGCTTTGTGAACTAAGAGGAAGACATGAAATTTCTACTGCAAGTTCATCAACAGTAGCTCATCATTTAGCTCTGAATCTTGGATACATTAGGAAGATTACATTGGAGATGAAACACATGCATGTTTTGGAAGAAAATCATGGTTGCATCCTGGATATGATCAGAACATTGGAAGAACCTAGGTTTTCCAAATTGTACATGAGTTTGGGAAGAACATATGGGATGATACATGAACATCTTCATTTGTCCTCGGATTTAGGGGAAGCTTTGGGGGATGATTTCATGGTCCTGGATGTTTTGAAACCATACGCCTCTTCTCAGATCTGTACACCTGAAGatctcattaaatttatgGACAATATTTTTGCCGAACTTGGTAACAATTACATTGAGGAGCTGTCTGTATG 1445 0.3958 MVIKIGGQIEKVNGKEMTYNEFVKRYMEKNQPVVLTGLMNGWRACKDWVTCEGQPNLQFFSTHFGVSKVQVADCGTREFTDQKRQEMSVSEFIEHWLSNSASQCSNETQTRNDQSVLYLKDWHFVKEYPEYLAYITPVFFCDDWLNLYLDNYRMHTDPDAYQENYEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVSGKKRWLFLAPSQSHLVFDRNMKNCVYNIFDEVSETKFPGFKKAIWLECLQEAGDIIFVPSGWYHQVHNLEDTVSINHNWFNAYSLSWVWNLLLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFTFLMYFALANLVLLCELRGRHEISTASSSTVAHHLALNLGYIRKITLEMKHMHVLEENHGCILDMIRTLEEPRFSKLYMSLGRTYGMIHEHLHLSSDLGEALGDDFMVLDVLKPYASSQICTPEDLIKFMDNIFAELGNNYIEELSV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01392 481 Pfam Cupin-like domain 20 280 IPR041667 -
Bva06g01392 481 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 470 - -
Bva06g01392 481 SUPERFAMILY Clavaminate synthase-like 7 310 - -
Bva06g01392 481 SMART cupin_9 117 297 IPR003347 -
Bva06g01392 481 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 470 - -
Bva06g01392 481 Gene3D Cupin 3 282 - -
Bva06g01392 481 ProSiteProfiles JmjC domain profile. 125 297 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01392 Bva-Chr6 10294152 10298866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01392 7 289 Glycosyltransferase AT1G78280 23.368 2.90e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva06g01392 Cupin_8 1.3e-25 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01392 - - gmx:100803814 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01392 06 10294152 10298866 Bva06g01392 06 10294152 10298866 ECH