Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01344 ATGGATATGAGAGGTGCCGATTTTAAGTGGTATGATGGGTTTTTCTTGTCAATGCTCGCTACCAGCGTAGTTATAGTCGCAATTAATTGGAAGCGCTACCATTCTTGTACATACCCCTTGCACATATGGATTATGGTTGACTACACTGTTGTGTTTTTTTTCCGACTGTTGATGTTTGTTGATAATGGACTTGCTGCTGGGATGGGATTAGATTTTGGGTGGCAACAGAGACATGCTCGTTTCTGTGGGAGATTAGTGGTCCTTTCAATCCTTGTTTTGCTCCTGTATCCATTTCTTTGGGCTTGGACTATTATCGGTACACTGTGGTTCAGCAGTGCCAACAGCTGtTTACCTGAAAAGGGTCAGAAATGGGGATTTCTCATCTGGTTGCTCTTTAGCTACTGTGGGCTTATTTGCATTGCTTGCATGTCACTAGGGAAGTGGTTGACACGAAGACAAGCACACTTATTACGTGCTCAACAGGGTATTCCTATATCTGAATATGGAGTCCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAGGCTGCAGGTCAAGAAACAAGAGGCATGGGCCAAGATGCTGCTGCCTATCATCCTGGACTTTACTTAACTCCTGCCCAAAGAGAAGCAGTTGAAGCACTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCAACCGATTGTAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTCGGGAATGAGGTTCGTGGCCTGCCTTGCGCTCACAATTTTCATGTTGAATGCATCGATGAATGGCTTCGACTGAATGTGAAATGCCCTCGGTGCCGTTGCTCAGTATTTCCAAATCTCGACCTTAGCGCTCTGTCCAATCTCCGTGCTGATTCAGAACGATCTTCTGCCAGTGTTGTTACAGCAACAAGATATGTGAGAGGCCAACCTTCTAGTCAGAGATACCTGTTGAGATTGCAGGGCCTTCTTCGTCCAGTTCGTACTGAAATTGCAGGGCCAGGTGGTGACACTGACAATGCTTTGGAAAGTGCTGAGAATGGCGTTGCACAAGTGGTGGCTCGGAATGCATCGACTAGAGACCATGCCCCTTTGGTTGAATGCACGCCTGTCAGTCATTCCAATGCACAAAACTA 1142 0.4632 MDMRGADFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIMVDYTVVFFFRLLMFVDNGLAAGMGLDFGWQQRHARFCGRLVVLSILVLLLYPFLWAWTIIGTLWFSSANSCLPEKGQKWGFLIWLLFSYCGLICIACMSLGKWLTRRQAHLLRAQQGIPISEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSSASVVTATRYVRGQPSSQRYLLRLQGLLRPVRTEIAGPGGDTDNALESAENGVAQVVARNASTRDHAPLVECTPVSHSNAQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01344 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 - -
Bva06g01344 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Bva06g01344 380 Pfam Ring finger domain 234 276 IPR001841 -
Bva06g01344 380 SUPERFAMILY RING/U-box 217 284 - -
Bva06g01344 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 IPR044793 GO:0004842|GO:0010182
Bva06g01344 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Bva06g01344 380 CDD RING-H2_RNF111_like 234 278 - -
Bva06g01344 380 SMART ring_2 235 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01344 Bva-Chr6 10026221 10030015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01344 58 350 C3H Transcription Factor Family AT3G47990 74.662 1.68e-160 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01344 K16284 - gmx:100812016 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00374 05 1860416 1864039 Bva06g01344 06 10026221 10030015 BWGD
Bva06g01344 06 10026221 10030015 Bva06g01344 06 10026221 10030015 ECH