Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01327 ATGCCCAGTATTCAGCAGAACAATGGCGGTAATTTGGTGTACCCATCTCCTCAGTCACCTTCGTATTCATTCAGAACTCCTTATCATGTTATTAGCAATGAGAAAGAAGCAACACCGTCACCATCTATTAGCAAAATCAGTCCACTTATTCTATTGGTTATTATAGTGCTAGCCGTTATCTTCTTCATATATGGACTTATCCATTTAGTTCTTTGGTTTCTGATGAAAAGGCCATCCTCTTCGTCTCTTTACCACTCCAACAGATTCCCTGAAGCCACGCGCTCCCGTGCTCTTCAAAGGCAGCTTCAACAGCTCTTCCGATTACATGACTCGGGTCTAGACCAAGCTATTCTAGACGCTCTGCCCGTTTTCTACTACAACGATGTATTGGGTTTGGAGGGACCATTAGATTGTGCTGTGTGTCTCTGTGAATTTTCTAAAGAGGACAAGCTGAGACTGTTGCCCATATGCAGTCATGCTTTTCATGTTCATTGCATAGACACATGGCTTCTTTCAAATTCCACATGCCCTCTTTGTAGAGCGACTCTTTCCAGCTCTGGCTTTCCCATGGAAAATCCAATCTGTAATTTTGATGTTTCTCGGGTTTTGCCAAACAGATTCACGGATGATGAAGAGAATGGGTGTTCGGACAATCAGATACCAGTAACTGCAGAGGAAAATGTTAGTGAAAGAAGGGTACTTTCTGTGAGACTTGGAAAGTTCAGAAATATTGGAATAGAGGGTggtagagaaagagagataggAGGAGGGGAAGAGAGCAGTAGCTGTAATTTGGATGCTAGAAGATGCTATTCCATGGGTTCATATCAGTATGTGATGGGTGATTCAAATCTGCAAGTGATCCTATCTCATAGCAGAAGCAGAGGTGGTGAAGAAAGTGACGTGAGGAGGAAATACCTGTTTGATATTGCAGAAGATGGGGATGtagatggaaagaaaataggtGGCAGAAGGAGCAGAGGTGATAGCTTCTCTGTTTCCAAAATCTGGCTTTGGtccaagaaaagcaaatttcACACTTCTTCAAATACCGCTTTCCCTTG 1064 0.4079 MPSIQQNNGGNLVYPSPQSPSYSFRTPYHVISNEKEATPSPSISKISPLILLVIIVLAVIFFIYGLIHLVLWFLMKRPSSSSLYHSNRFPEATRSRALQRQLQQLFRLHDSGLDQAILDALPVFYYNDVLGLEGPLDCAVCLCEFSKEDKLRLLPICSHAFHVHCIDTWLLSNSTCPLCRATLSSSGFPMENPICNFDVSRVLPNRFTDDEENGCSDNQIPVTAEENVSERRVLSVRLGKFRNIGIEGGREREIGGGEESSSCNLDARRCYSMGSYQYVMGDSNLQVILSHSRSRGGEESDVRRKYLFDIAEDGDVDGKKIGGRRSRGDSFSVSKIWLWSKKSKFHTSSNTAFP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01327 354 Pfam Ring finger domain 137 180 IPR001841 -
Bva06g01327 354 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Bva06g01327 354 SUPERFAMILY RING/U-box 117 185 - -
Bva06g01327 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 352 - -
Bva06g01327 354 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 4 352 - -
Bva06g01327 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 187 IPR013083 -
Bva06g01327 354 SMART ring_2 138 179 IPR001841 -
Bva06g01327 354 CDD RING-H2_PA-TM-RING 137 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01327 Bva-Chr6 9969886 9971317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01327 44 344 C3H Transcription Factor Family AT2G18650 44.000 1.51e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01327 - - aprc:113846147 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01327 06 9969886 9971317 Bva06g01327 06 9969886 9971317 ECH