Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01311 ATGGGTGGCAAGCACAGGTGGAAAATCTCTTTCCATCGTTCTTCATCAAACTCGAAGCTGGATTCGAAGCCACCACCGAGGGAGTTCATATGCCCAATCTCTGGGAGTTTAATGTCGGACCCAGTTGTTGTCGCTTCGGGTCAGACCTTCGAACGAGTTGCTGTTCAAGTGTGCAAAGATTTGAACTTCACCCCGAAGCTGGAGGACGGGTCCAGACCCGATTTCTCTGCGATCATTTCCAATTACGCCTTCAAAACAACGATACTCCATTGGTGCGATCAATCGGGAACGGAGCACCCGCGCGCACCCGATTACAGCTCTGTGGAGAGGATTGTCCGTGCAGCAATGGCATCCCAGCCCGAAATTAGATTTTCGGAGACAGAATTGCTCAAGGGCGTAGCTGATAATCCAGCGGTGCTTTTCTCTCACGCTGCGACCGAATTGGGTCCCCGGATCACCCACTTCAATTCGAGCTCTTCCGAGGAATCGGTAATTATTGCGGCTAGTCCAGGAACCCCTCTGCCCTTGACGATTCGTCCCACCTCTTACTCTGCGTCGACGTCTTCCTCTGAAATCACAGAGACCGATATCCAAATCCCTAGTGGTCCAATTTcagaagaagaggagaaatTGGTTGCCAAATTCAGGAGCGAGGAAGTGTTTGAACAAGAAGAAGCCGTAATTTCACTGAGAAACATGACAAAGAGCAGAGAGGACACCAGGGTTTCCCTCTGCTCCCCTCGGTTGATCTCTGCCTTGCGACCATTGATCGTCTCCAGGTACTCTGTTGTTCAAGTAAACGCCGCCGCTTCATTGGTCAACCTTTCCCTGGAAAAATCCAATAAGCTGAAGATAGTAAGGTCAGGATTCATCCCCGTTTTGATTGATGTCTTGAAAGGGGGATTCGCTGAGTCGCAGGAACACGCTGCGGGTGCGCTATTCAGCTTAGCTCTAGATGACGATAACAAAATGGCTATCGGTGTTCTTGGCGCATTGCAGCCACTCATGCACGCGTTGAGGTCCGAATCGGAAAGGACTCGGCACGACTCAGCGCTCGCTTTGTACCATTTGACCTTAGTTCAAAGCAACCGGGTCAAACTTGTAAAACTCGGGGCGGTGCCCACGCTACTAACGATGGTGAAATCGGGAAACTTGGCAAGTCGGGTTTTGCTAATTCTATGTAACCTTGCAGCGTGTAACGAGGGGCGTACGTCGATGCTCGACGGGAATGCGGTGGAGTGCTTGGTGGGGTTGTTGAGGAGGAACGAATTAGACTCAGAGGCGACTCGGGAGAACTGTGTGGCCGCATTGTATGCCCTTAGCCAAGGGAGCTTCAGGTTCAAAGGATTGGCAAAGGAGGCAAGGGCAGTGGAAGTGTTAAAGGAGATTGAAGAGAGAGGGACAGAGAGGGCGAGAGAGAAGGCCAAGAGAATAGTGCAGATGATGAGAGCAGGAGAAGACGAAGACGGAGTCAATGTCGATGGGATTTTGGATTCTGGTGGATTAAATCGAAATCGGTTTCGAGTTGGAGTTAGCAACACAACAACATTTTA 1553 0.501 MGGKHRWKISFHRSSSNSKLDSKPPPREFICPISGSLMSDPVVVASGQTFERVAVQVCKDLNFTPKLEDGSRPDFSAIISNYAFKTTILHWCDQSGTEHPRAPDYSSVERIVRAAMASQPEIRFSETELLKGVADNPAVLFSHAATELGPRITHFNSSSSEESVIIAASPGTPLPLTIRPTSYSASTSSSEITETDIQIPSGPISEEEEKLVAKFRSEEVFEQEEAVISLRNMTKSREDTRVSLCSPRLISALRPLIVSRYSVVQVNAAASLVNLSLEKSNKLKIVRSGFIPVLIDVLKGGFAESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGAVPTLLTMVKSGNLASRVLLILCNLAACNEGRTSMLDGNAVECLVGLLRRNELDSEATRENCVAALYALSQGSFRFKGLAKEARAVEVLKEIEERGTERAREKAKRIVQMMRAGEDEDGVNVDGILDSGGLNRNRFRVGVSNTTTF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01311 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 289 326 IPR000225 GO:0005515
Bva06g01311 517 Pfam U-box domain 26 94 IPR003613 GO:0004842|GO:0016567
Bva06g01311 517 MobiDBLite consensus disorder prediction 1 25 - -
Bva06g01311 517 CDD RING-Ubox 30 61 - -
Bva06g01311 517 Gene3D - 205 483 IPR011989 -
Bva06g01311 517 Pfam Armadillo/beta-catenin-like repeat 319 358 IPR000225 GO:0005515
Bva06g01311 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 102 IPR013083 -
Bva06g01311 517 SUPERFAMILY ARM repeat 210 483 IPR016024 -
Bva06g01311 517 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Bva06g01311 517 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Bva06g01311 517 SUPERFAMILY RING/U-box 12 100 - -
Bva06g01311 517 SMART arm_5 319 359 IPR000225 GO:0005515
Bva06g01311 517 SMART arm_5 399 442 IPR000225 GO:0005515
Bva06g01311 517 SMART arm_5 360 398 IPR000225 GO:0005515
Bva06g01311 517 SMART arm_5 278 318 IPR000225 GO:0005515
Bva06g01311 517 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 3 512 - -
Bva06g01311 517 PANTHER U BOX DOMAIN-CONTAINING 3 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01311 Bva-Chr6 9887429 9889474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01311 25 513 U-box Gene Family AT5G65200 60.117 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01311 - - aip:107643932 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01311 06 9887429 9889474 Bva06g01311 06 9887429 9889474 ECH