Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01302 ATGGCTTCCTCTACGGCAAACCAAGTTTCCTCTGCTAGGCACTGCACCTATAACCGGAAGCAGAAATCTCTTGGCCTCCTATGCACCAATTTCTTGAGCTTGTATAATCATGAAGGTGTTCACTTGATTGGCCTTGACGATGCTGCTTCCCGATTAGGGGTCGAGAGACGGCGAATCTATGACATAGTTAACGTATTGGAGAGTGTCGGGGTGCTTGCAAGAAAAGCCAAGAATCAATACACTTGGAAAGGCTTTGGGGCAATTCCTGGGGCCTTGCAGGAGCTTAAGGAGGAGGGTATGAGGGAAAATCCCAATGCATTTGATGGTATCAACGATGTCGACCATGGAAAAGTGTCCGATGAcgaggatgaagaagaaacatTATCCAATCCAAGTACTGGAAGTCAGAATGAGAAGTCCAATCCTAATTCTGGTCTTCTCAAATCCTTGAAAAAcgAAAACCGAAGGGAAAAATCCCTGGCGCTTCTAACTCAAAATTTTGTCAAGCTATTTGTCTGCTCTAATGTGGAGTTGATCTCCCTTGATGATGCTGCAAAATTATTGCTTGGGGATGCGcataatacatcaataatGAGAACAAAAGTCAGACGTCTATATGATATTGCAAATGTGCTGTCTTCTATGAATCTAATTGAGAAGACTCATACATCGGACACAAGAAAACCGGCATTCAGGTGGCTAGGATTGACAGGTAAAGCAGAGAATGAATCTGCTTGCAATTCACATCTCACTGAGTCTAGGAAAAGGATGTTTGGAGATGATGTcacaaacattaattttaagagGAATAAAGTGGACTTATTTGTCAACGGGGACTTAAATCAGAAGCCTAAGACGCTAAATAAAGTGGATAATGGTAGTTGGCTGGGTCAGGCGGGTAAAAGCTGTTCAACACAAGAATCAAAACAGACTACAAGGAGTTATCAGTTTGGTCCTTTTGCTCCAGCTTATGTGCCCAAAGCAAGTGCCTCCGAGAAGAATAATGCGAAGCAGGTGCATGATTGGGATAGTCTTGCCACTGCTTATCGTCCACAGTATCACAACCAAGCCTTGAAAGACCTATTCTCCCACTATATGGAAGCATGGCAATCATGGTACTGCGAAGTCGCTGGAAAAAGGGGAATACAAATTCTGTA 1157 0.4157 MASSTANQVSSARHCTYNRKQKSLGLLCTNFLSLYNHEGVHLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFGAIPGALQELKEEGMRENPNAFDGINDVDHGKVSDDEDEEETLSNPSTGSQNEKSNPNSGLLKSLKNENRREKSLALLTQNFVKLFVCSNVELISLDDAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGLTGKAENESACNSHLTESRKRMFGDDVTNINFKRNKVDLFVNGDLNQKPKTLNKVDNGSWLGQAGKSCSTQESKQTTRSYQFGPFAPAYVPKASASEKNNAKQVHDWDSLATAYRPQYHNQALKDLFSHYMEAWQSWYCEVAGKRGIQIL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01302 385 MobiDBLite consensus disorder prediction 129 148 - -
Bva06g01302 385 PANTHER TRANSCRIPTION FACTOR E2F 1 376 IPR015633 GO:0000978|GO:0006357
Bva06g01302 385 SUPERFAMILY "Winged helix" DNA-binding domain 157 236 IPR036390 -
Bva06g01302 385 Gene3D - 150 237 IPR036388 -
Bva06g01302 385 Gene3D - 14 87 IPR036388 -
Bva06g01302 385 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Bva06g01302 385 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Bva06g01302 385 MobiDBLite consensus disorder prediction 103 148 - -
Bva06g01302 385 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Bva06g01302 385 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Bva06g01302 385 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 376 - -
Bva06g01302 385 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01302 Bva-Chr6 9844714 9847823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01302 14 377 E2F-DP Transcription Factor Family AT3G48160 57.880 1.83e-136 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bva06g01302 E2F_TDP 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01302 K09391 - gmx:100806151 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00402 05 1992436 1995561 Bva06g01302 06 9844714 9847823 BWGD
Bva06g01302 06 9844714 9847823 Bva06g01302 06 9844714 9847823 ECH