Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01273 ATGGGGCATAAAAAGAGGAACCCTGCTCCGCGTTCTAAACAGTCCGGGGCGGCTTCTCCGGTGACGCAATCTGCCATCGGCGGAGCCACCAATGGTCCTACTTCAGTAGAACCCGAGTTGTGCGCCAATTCTAATCACACTCTTCATAGCCCAACTAAGGTCGATGTGCCAATTCAATCTGATGGTTCTGCTTACTCCACAATCAAGCTTGAATGCGAGCGGGCCCTAACTGCGCTTAGGCGGGGTAATCACACCAAAGCACTGAGGCTAATGAAGGAATCATGCTCCCGAAATGAGAACTCGGGTTATTTGGCATTAATTCATCGAGTTCATGGTACTGTGTTTGTCAAAGTAGCGTCGATAATTGATGACCCTGGTGCGAAGCAGCGGCATTTGAAAAATGCGATTGAGTCAGCACGAAAAGCAGTTGAGCTGTCACCAAATTCTATTGAGTTTGCACATTTTTATGCAAATTTGCTATACGAGGCAGCAAATGAGGGGAAAGAATACGATGAAGTCATGCGGGAGTGTGAGAGAGCGCTTTCGATTGAAAATCCAATTGATCCTGCGAAGGAGAGCTTGCAAGAAGAAAGCCAGCAAAAAATATCAACAGTGGAAGCTCGGATAGCACATTTACAGAATGAGTTGCGGCAGCTAATTCAGAAATCCAACATATCTTCTATATCGACTTGGATGAAAAATCTGGGTAGTGGTGAGGAGAAATTCCGGTTGATTCCGATAAGGAGGGGTATAGAAGACCCAATGGAGGTGAGGTTGGTCCAAACTAGAAGGCCAAATGAGATCAAGAAGGTGACCAAAACCcctgaagaaagaagaaaagaaattgaagttcGGGTGGCTGCTGCAAGGCTGCTGCAGCAGAAGTCAGAGTCACCCCAATCTCATAATGACACAGATAGAGATGACAGAATGGATTCGTCCTCAGGAACTGGTCAGAGAATAGGTGACAGACGCAGGTATGGAAATATGCGGAAAAATGGCTCTACAGCAGAAAGGAAGGATTGGGTTCGCTCATATTGGAATTCAATGAGTCTTGATATGAAGAAGGACTTACTTAGAATCAAGGTTTGTGATCTCAAGTCCCACATTGGGTCTTCCAAGGATGCTTCGCTGAATGAGCTTCTATCAGAAGCTTTGTCCTATGCTGAGGTCAATAGAACTTGGAGATTTTGGCTTTGCTGCCGTTGCAATGAGAAATATTCAGATTCAGAATCTCATATGCAGCATGTAGTGCAGGAACACATGGGAAATCTCTTGCCTAAAATGCAGAGACTTTTGCCTCAAAATGTTGACAATGAATGGACTGATATGATTCATAATTGCTCTTGGAAGCCTCTGGAAGTCTCAGCTTCAGTCAAAATGCTTGAAAAGcaagcaaaatggaagaattctaGATTCCCTGAGGACTCCTACCTGGGGGTTCACCACACTGAGGAATACGAGGATTGTTTTAAAGATGCAAACGAATCTTATTCTGAGAGGGAAAGTTCAGGGTGTGATCTCCATGATTGTGCAACAGAAAGCAGTAACTATTGTAAGATTGCAGAAAATGATACTATAGGACGTGATGAGGTCCAAGGATCTATAGCATATCCCAATGTTGATAGTTGGCCAATATCTGATGACCCTGAGCGCTCAAAGCTTCTTGAGAAAATTCATGACATACTAGAGATGCTCATCAGAAACAAATATTTCTCTGCTAGTCATCTTAACAAAGTCATACAATTTACTATGGATGAGATACAGGGTCTTGCTGCTTGTTCTCAGCTTTTAAACCATGGTGTTGAGCAAACACCGATGTGCATATGCTTTCTGGGAGCTTCTCAACTTaagaaaattctcaaatttttgcaAGAACTGTCTCATGCTTGTGGCTTGGGTAGATATGCTGACAAAAGTAGTAAACCTATGGATGATTTGCATAATGCCATCCAAGGTCCTGAGATCAAAGAGAAGATCATTCTTAATGGAGATGCATCATGCCTCCTTCTGGATGAGTGTTTATTGCCAACAGAAGTCACTGCCAGTACAGCTCAGAGTGCTGCTTCAGATGATGTGACTGCCCCAACTTCCCCTGAAAGGGTTTTACACAATACCGATGCTTTGCTATCCTGGATATTTTCAGGTTTGTCTAGTGGGGATCAACTGACATCATGGATGCGCACAAAAGAAGATAATAAGCATCAAGGAATGGAAATCATCCAGATGCTTGAGAAGGAATTTTATCACCTACAGAGCCTTTGCGAGAAGAAGTGTGAGTATATGAATTCTGAGGAAGCACTGCAAGCGGTAGAGGATCTTTGTCTTGAAGAAGGTAAAAAGAGGGAAAATGTCAGTGAATTTGTCCAGCGAAGCTATGAGTCTGTGCTAAGAAAGCGGAGAGAAGAGCTCACTGAGAGTGAGAATGATGTGATGTATGTTGGCAATAGGTTCGAGTTGGATGCTATATCAAATGTTCTGCAAGAAGCAGAATCGATGAATGTTAATCATTTTGGCTATGAGGAAAACTATGCTGGTGTCACTTCTCAGCTATGTGATTTAGAATCTGGTGAAGATGATGAATGGAGAATGAAGGACTATTTTCATCAAATGGATAGTTGTATAGAAATTGCTattcagaaaatgaaagaacatTTATCTATAGAGCTAAGCAAAATTGATGCAAGAATCATGAGGAGTGTTACTGGGATGCAGCAATTGGAACTCAAACTTGAGTCTGTTTCTGCTTATGATTATCGAGCAATATTATTGCCTATAGTGAAGGCATACCTGAGtGCACACCTGGAAGATTTGGCTGAGAAAGATGCCAGAGAGAAGTCTGATGCTGCAAGGGAAGCATTTTTGGCGGAACTTGCTCTTGATTCAAAGAAGGTTGTTAAAGGGGGTAGTGAGAACCCTAGACACTTGgagaagaaagacaagaaaaagaataaagagcacaagaaaacaagaaattcaaagACTACAGGTGGTCATGAGCAGCTCTTGCTTCAAGCCACAATTCCTGATTCAGTTTGCTATCCAGTTGAACCTGATAATGACAATGAGGATTCTGAGATTGTTCCTATGAATGATGACGAATTGGAACAACAGGAAGAGGAGTTTAAACGTAAAATTGAGCTGgaagaggaggaaaaaaagCTGGAAGAAACATTGGAGTTTCAGCGGCGGATAGAAAATGAGGCTAAATTGAAGCACCTTGCTGAGCAACAGAAGAAGTCCTCTGGAATATATTTCGAGAAAGTGATAGACAAGCTTCAGGATGCTCCGTTGAAGGTTCTTACTAATGGTTTAGATGTTGATGTACTAATGAGACCGTCTATTCTGGAGCAGTCAGCAAAGGAGAATGGATATTCAAGCAATCAGGATAGTGCGCTTATTACCACAGTGAATGGTTCCATAGTGCCAAGTAAAACAGCACAAATGCGTCAGCCAAAAGTTAGGCAAGATCCGCCTAATGGAGGAGTTCCAGAGAATGGTCTACAGTTGCTTGATTGGCATACAGGAAAAAAGGGTAAGCGGCATAATAAGAATTCTTCCAGATTGGTTGACGGAAAGTCTGAAGCCGTCCCATTGGAAAAGGAGAATATTGAGGTTAGACATAGTGACAGTCACTATAGAGGGCAGGTCAAATTCCATAATATTCAAGATTCTAACAATGCGTTGGGAGTCAATGGACCAAAGTCCCTGAAGGAATTGAAAGCAGAGGATGATGACGAGGAAAGATTCCAAGCTGATCTTAAAAAAGCTGTACGCCAGAGCCTGGACACATATCAAGCACATCAAACATTGCCCAGAGATTCGAAGCCCCATAGAGCTTCACATTTAGATAATTCGGGTACTCCACTGGAGGAGAACATAACTAACAAAGTGGGTGGTGCTAATTTGCTGGGTGCTGGGCTGAAGAATGAAGTGGGTGAATATAATTGCTTTCTCAATGTTATTATACAGTCCTTATGGCATTTAAGACGGTTTCAAGAGGATTTTCTTCGCAGATCAAGTTCAGAGCATGATCATGTGGGTAATCCTTGTGTTGTCTGTGCATTGTATGAAATCTTTAATGCCATGGATGCTGCATCAAAGGATTCCAGTGGAGAAGCAGTAGCCCCTACTTCCTTGAGGATAGCTCTGAGCAACCTATATCCAGATAGTAACTTCTTCGAGGAGGCCCAAATGAATGATGCTTCTGAAGTACTGGCCGTGATATTTGACTGTCTTCACCGATCATTCACTCGTGGTTCAAGTGCTTCTGATACAGAATCAGTGGAGAGCAACTGCGCGGGATCTTGGGATTGTGCGCATAGCACTTGTATAGCACATTCACTCTTTGGAATGGATATTTTTGAGCGAATGAACTGTTATCATTGCGGTCTCGAGTCCAGACATTTGAAGTATACTTCCTTTTTTCACAACATAAATGCCAATGCCCTCCGCACGATGAAGATTATGTGTGCTGAAAGCTCCTTTGATGAGCTTTTGAATCTTGTGGAGATGAATCATCAGTTGGCTTGTGATCCAGAGACAGGTGGATGTGGCAAGCTCAACTACATCCATCACTTTCTTTCAAGTCCTCCCCATGTTTTTATGACAGTTCTAGGTTGGCAGAATACCTGTGAGAGTGTTGATGATATAACAGCTACTCTTGCAGCACTCAACACTGAGATAGATATCAGTGTCCTTTATCGTGGTTTAGATCCAAAAAACACCCATCGCTTGGTTTCAGTGGTTTGCTACTATGGGCAACATTACCATTGCTTTGCCTATAGCCATGACCAAGACAGATGGATTATGTATGACGACAAGACAGTCAAGGAAATTGGTGGATGGTCAGATGTTCTCACATTGTGTGAAAAAGGGCATTTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTA 4919 0.4139 MGHKKRNPAPRSKQSGAASPVTQSAIGGATNGPTSVEPELCANSNHTLHSPTKVDVPIQSDGSAYSTIKLECERALTALRRGNHTKALRLMKESCSRNENSGYLALIHRVHGTVFVKVASIIDDPGAKQRHLKNAIESARKAVELSPNSIEFAHFYANLLYEAANEGKEYDEVMRECERALSIENPIDPAKESLQEESQQKISTVEARIAHLQNELRQLIQKSNISSISTWMKNLGSGEEKFRLIPIRRGIEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSHNDTDRDDRMDSSSGTGQRIGDRRRYGNMRKNGSTAERKDWVRSYWNSMSLDMKKDLLRIKVCDLKSHIGSSKDASLNELLSEALSYAEVNRTWRFWLCCRCNEKYSDSESHMQHVVQEHMGNLLPKMQRLLPQNVDNEWTDMIHNCSWKPLEVSASVKMLEKQAKWKNSRFPEDSYLGVHHTEEYEDCFKDANESYSERESSGCDLHDCATESSNYCKIAENDTIGRDEVQGSIAYPNVDSWPISDDPERSKLLEKIHDILEMLIRNKYFSASHLNKVIQFTMDEIQGLAACSQLLNHGVEQTPMCICFLGASQLKKILKFLQELSHACGLGRYADKSSKPMDDLHNAIQGPEIKEKIILNGDASCLLLDECLLPTEVTASTAQSAASDDVTAPTSPERVLHNTDALLSWIFSGLSSGDQLTSWMRTKEDNKHQGMEIIQMLEKEFYHLQSLCEKKCEYMNSEEALQAVEDLCLEEGKKRENVSEFVQRSYESVLRKRREELTESENDVMYVGNRFELDAISNVLQEAESMNVNHFGYEENYAGVTSQLCDLESGEDDEWRMKDYFHQMDSCIEIAIQKMKEHLSIELSKIDARIMRSVTGMQQLELKLESVSAYDYRAILLPIVKAYLSAHLEDLAEKDAREKSDAAREAFLAELALDSKKVVKGGSENPRHLEKKDKKKNKEHKKTRNSKTTGGHEQLLLQATIPDSVCYPVEPDNDNEDSEIVPMNDDELEQQEEEFKRKIELEEEEKKLEETLEFQRRIENEAKLKHLAEQQKKSSGIYFEKVIDKLQDAPLKVLTNGLDVDVLMRPSILEQSAKENGYSSNQDSALITTVNGSIVPSKTAQMRQPKVRQDPPNGGVPENGLQLLDWHTGKKGKRHNKNSSRLVDGKSEAVPLEKENIEVRHSDSHYRGQVKFHNIQDSNNALGVNGPKSLKELKAEDDDEERFQADLKKAVRQSLDTYQAHQTLPRDSKPHRASHLDNSGTPLEENITNKVGGANLLGAGLKNEVGEYNCFLNVIIQSLWHLRRFQEDFLRRSSSEHDHVGNPCVVCALYEIFNAMDAASKDSSGEAVAPTSLRIALSNLYPDSNFFEEAQMNDASEVLAVIFDCLHRSFTRGSSASDTESVESNCAGSWDCAHSTCIAHSLFGMDIFERMNCYHCGLESRHLKYTSFFHNINANALRTMKIMCAESSFDELLNLVEMNHQLACDPETGGCGKLNYIHHFLSSPPHVFMTVLGWQNTCESVDDITATLAALNTEIDISVLYRGLDPKNTHRLVSVVCYYGQHYHCFAYSHDQDRWIMYDDKTVKEIGGWSDVLTLCEKGHLQPQVLFFEAVN 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01273 1639 SUPERFAMILY TPR-like 71 186 IPR011990 GO:0005515
Bva06g01273 1639 Gene3D Cysteine proteinases 1291 1637 - -
Bva06g01273 1639 MobiDBLite consensus disorder prediction 12 55 - -
Bva06g01273 1639 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Bva06g01273 1639 Gene3D Tetratricopeptide repeat domain 63 220 IPR011990 GO:0005515
Bva06g01273 1639 SUPERFAMILY Cysteine proteinases 1306 1636 IPR038765 -
Bva06g01273 1639 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1306 1638 IPR028889 -
Bva06g01273 1639 MobiDBLite consensus disorder prediction 1 55 - -
Bva06g01273 1639 Coils Coil 1032 1068 - -
Bva06g01273 1639 CDD Peptidase_C19 1397 1636 - -
Bva06g01273 1639 MobiDBLite consensus disorder prediction 291 334 - -
Bva06g01273 1639 MobiDBLite consensus disorder prediction 300 314 - -
Bva06g01273 1639 Pfam Protein of unknown function (DUF627) 74 185 IPR006866 -
Bva06g01273 1639 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1639 - -
Bva06g01273 1639 MobiDBLite consensus disorder prediction 1145 1164 - -
Bva06g01273 1639 MobiDBLite consensus disorder prediction 966 1001 - -
Bva06g01273 1639 Coils Coil 195 222 - -
Bva06g01273 1639 Pfam Protein of unknown function (DUF629) 343 877 IPR006865 -
Bva06g01273 1639 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1639 - -
Bva06g01273 1639 MobiDBLite consensus disorder prediction 1268 1292 - -
Bva06g01273 1639 Pfam Ubiquitin carboxyl-terminal hydrolase 1315 1621 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01273 Bva-Chr6 9707769 9716368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01273 1 1636 C2H2 Transcription Factor Family AT3G47910 56.910 0.0 1764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01273 - - adu:107493676 2253.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01273 06 9707769 9716368 Bva05g00434 05 2140730 2149498 ECH
Bva06g01273 06 9707769 9716368 Bva06g01273 06 9707769 9716368 ECH