Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01255 ATGCCCAACATGCTGCTCGCAAGGCTTTCCACTCCAACCCCCAAGCTGGCTGTGAATGGTGTCAATAACACGAGGAGAGTTCTAAGGGGAAAGTTGAACAAAGGTCCATGCTCTGTCACTAACCCAATAGACAGTTGTTGGAGGTGTGATCCATTGCGCCATGCTGTGATCCAACCAGTGCCAGTATGGATTACCTTCGCTCGTAGCATGATTATCAGACTAAGTGAAGAGCTTTTAGTCACTTCTGATAAGACAATAGATGGTCGTGGTGCCAATGTCCATATTAGCGGTGGTGCTCAAATTACGTTGCAGTTTGTGAGAAATGTGATCATTCATGGGATGTGCGTGCATGATAGCAAAAGGGGGAATGGTGGGATGATCAGAGACACAACGAGTCACTATGGATATCGCACGCAAAGTGACGGCGATGGAATCTCATTGTTTGGAGCCACAAATGTGTGGATAGACCACATTTCTATGTGGAATTGCTATGATAGGTTAATTGATGGAGTCATGGCATCCACAGCCATTACCGTTTCCAATTGCCATTTTACCAGACACAATGACGTCATATTATTTGGTGCGAGTGATTGGTA 596 0.4547 MPNMLLARLSTPTPKLAVNGVNNTRRVLRGKLNKGPCSVTNPIDSCWRCDPLRHAVIQPVPVWITFARSMIIRLSEELLVTSDKTIDGRGANVHISGGAQITLQFVRNVIIHGMCVHDSKRGNGGMIRDTTSHYGYRTQSDGDGISLFGATNVWIDHISMWNCYDRLIDGVMASTAITVSNCHFTRHNDVILFGASDW 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01255 198 PANTHER PECTATE LYASE 17 51 - -
Bva06g01255 198 PANTHER PECTATE LYASE 52 197 - -
Bva06g01255 198 Pfam Pectate lyase 78 197 IPR002022 -
Bva06g01255 198 Gene3D - 22 198 IPR012334 -
Bva06g01255 198 PRINTS Pollen allergen Amb family signature 141 162 IPR018082 -
Bva06g01255 198 PRINTS Pollen allergen Amb family signature 77 93 IPR018082 -
Bva06g01255 198 PRINTS Pollen allergen Amb family signature 41 66 IPR018082 -
Bva06g01255 198 PANTHER PECTATE LYASE 18-RELATED 17 51 IPR045032 GO:0030570
Bva06g01255 198 PANTHER PECTATE LYASE 18-RELATED 52 197 IPR045032 GO:0030570
Bva06g01255 198 SMART amb_all 69 198 IPR002022 -
Bva06g01255 198 SUPERFAMILY Pectin lyase-like 17 198 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01255 Bva-Chr6 9632791 9634068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01255 5 197 Polysaccharide Lyase AT3G01270 45.783 1.87e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01255 K01728 - tcc:18610480 265.003