Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01242 atgTCTAGCAGAAGGTCGCGATCAAGGCAATCGGGTGGTTCGATGAATATCAGCGATGATCAGATCAATGACCTCATATCCAAGTTGCAACAGCTTCTTCCGGAGCTTCGCAATAGCCACTCCGACAAGGTTTCAGCTGCCAAGGTGTTACAAGAGACATGCAACTACATTAGAAACTTGCACAGGGAAGTTGATGATCTAAGCGACCGCTTATCTGAGCTGTTGGCCACAAGCGACACTGCCCAAGCTGcaattattagaaatttaCTCATGCAATA 278 0.4496 MSSRRSRSRQSGGSMNISDDQINDLISKLQQLLPELRNSHSDKVSAAKVLQETCNYIRNLHREVDDLSDRLSELLATSDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01242 92 Coils Coil 57 77 - -
Bva06g01242 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Bva06g01242 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Bva06g01242 92 MobiDBLite consensus disorder prediction 1 20 - -
Bva06g01242 92 CDD bHLH_AtPRE_like 17 77 - -
Bva06g01242 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Bva06g01242 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Bva06g01242 92 Gene3D - 19 88 IPR036638 GO:0046983
Bva06g01242 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01242 Bva-Chr6 9564405 9565147 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01242 17 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 84.416 2.65e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g01242 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01242 - - csv:101219790 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01242 06 9564405 9565147 Bva05g00459 05 2264609 2264994 ECH
Bva08g01465 08 7699027 7699588 Bva06g01242 06 9564405 9565147 ECH
Bva11g01014 11 11810769 11811428 Bva06g01242 06 9564405 9565147 ECH
Bva06g01242 06 9564405 9565147 Bva06g01242 06 9564405 9565147 ECH