Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01239 ATGTCTAGCCGAAGAAGATCCAGAGCTTCAAAATTCACAGAGAATGAGATTAATGATCTTGTCTCAAAGTTACAAGCAATACTGCCACAACTAAACCAAAGAACCAACTCAAGGGTATCAGCGTCGAAGATTTTGAAGGAAACATGCAGTCACATCATACGGTTGCAGAAAGAGGTGGAAGAGCTTAGTGAAAGCCTATCAAGATTGATGGATTCTGCGGATATCAGTGATATTGACGAAGAGACTCTTAGAAGATTTTTGCAACAATA 269 0.3941 MSSRRRSRASKFTENEINDLVSKLQAILPQLNQRTNSRVSASKILKETCSHIIRLQKEVEELSESLSRLMDSADISDIDEETLRRFLQQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01239 89 Gene3D - 2 85 IPR036638 GO:0046983
Bva06g01239 89 Pfam Helix-loop-helix DNA-binding domain 15 56 IPR011598 GO:0046983
Bva06g01239 89 PANTHER DNA BINDING PROTEIN 1 89 - -
Bva06g01239 89 Coils Coil 52 72 - -
Bva06g01239 89 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Bva06g01239 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Bva06g01239 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 71 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01239 Bva-Chr6 9539698 9540053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01239 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 51.899 1.18e-18 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g01239 HLH 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01239 - - gmx:100790746 110.538