Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01232 ATGGAGGGAGGTGATGATCTCCACCACCACCGTCCAAACTTCCCATTCCAACTccttgagaagaaagaagatcaagAAGCTCCATCTTGTTCCACCTCTTCTCCTTACCCTTCCTTAGCCATCTCTGCTGAACCCAGCACTTCCAATTCAAACCGATCCAACCAGCTAGCCCTACCATCCTCTGAACCCTCCAATAAAAAACCGCTGCCAAAAAGAACCTCCACCAAGGACCGACACACTAAAGTGGATGGAAGGGGCCGCCGTATTCGAATGCCCGCACTCTGTGCTGCCCGAGTCTTCCAACTCACCCGTGAACTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTACTCCAACAGGCTGAACCCTCTGTCATCGCCGCCACCGGAACTGGAACGATCCCAGCTAACTTCACTTCACTTAACATATCTCTCAGAAGCTCAGGCTCTACCATGTCTGTCCCATCACAGTTAAGATCCTCCTACTTCAATCCCAATTTCTCAGTTCAACAGAGAAGAAGCTTGTTCCCCGGAATCGGCTTGTCTTCTGACAACACCAACAGTACTTCCACGCTTCTCAATTTCCAAACCAATAATTTGTCCACCACCATGTTGCAAGCCAAGCAGGAATTGCGTGATGGGGGTGCTCCCTCTTCTTCTACCTTGGATTTGTCAGAAACGGAGGAAGGTATGGGAAGAAAACGAAGACCCTCCTCCGACCACGACTTGTCCTCCACGCAGCATCAAATGGGCAGCTATTTGTTGCAGTCTAGCGCAGGAGCCATTCCGGCGAGTCATGCTGCCAATATTTGGATGGTCGCCAATTCCAATAATCAAGTTATGAGTGGTGATCCAATATGGACATTCCCACCGGTTAACAATAATGCTTTGTATAGGGGCAGCATGTCAAGTGGATTGCATTTTATGAATTTCCCTACACCTATGGCGTTGTTGCCAAGTCAACAATTAGGGTCGTCTGGGATTGTTGGTGGTGGCAGTGGAAGCGGAAGCGGCAGTGGCAGTGGCGGAGGTGggaatataaatgaattaggGCATTTGAGTATGCTAGCAGGGCTTAACCCATATCGGCCGTTGATCGGAGTTTCTGAGTCTCAGGCAAGTGGGTCCCAATCACATCATGGCAGCGGCGATGATCGACATGATAGCACCAGCCACCACTCATA 1187 0.4903 MEGGDDLHHHRPNFPFQLLEKKEDQEAPSCSTSSPYPSLAISAEPSTSNSNRSNQLALPSSEPSNKKPLPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSVQQRRSLFPGIGLSSDNTNSTSTLLNFQTNNLSTTMLQAKQELRDGGAPSSSTLDLSETEEGMGRKRRPSSDHDLSSTQHQMGSYLLQSSAGAIPASHAANIWMVANSNNQVMSGDPIWTFPPVNNNALYRGSMSSGLHFMNFPTPMALLPSQQLGSSGIVGGGSGSGSGSGSGGGGNINELGHLSMLAGLNPYRPLIGVSESQASGSQSHHGSGDDRHDSTSHHS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01232 395 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Bva06g01232 395 MobiDBLite consensus disorder prediction 211 248 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 368 395 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 69 88 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 328 345 - -
Bva06g01232 395 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 10 394 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 228 243 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 1 88 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 328 347 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 211 227 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 381 395 - -
Bva06g01232 395 Pfam TCP family transcription factor 73 243 IPR017887 -
Bva06g01232 395 MobiDBLite consensus disorder prediction 1 27 - -
Bva06g01232 395 MobiDBLite consensus disorder prediction 28 68 - -
Bva06g01232 395 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 394 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01232 Bva-Chr6 9512383 9515004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01232 66 387 TCP Transcription Factor Family AT3G47620 44.634 3.21e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva06g01232 TCP 4.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01232 - - pvu:PHAVU_003G190900g 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01232 06 9512383 9515004 Bva05g00468 05 2307389 2309131 ECH
Bva06g01232 06 9512383 9515004 Bva06g01232 06 9512383 9515004 ECH