Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01225 atGATGGGAAGACAACCTTGCTGTGACAACGTTGGAGTTAAAAAAGGTCCTTGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACGCGGACCTGGCAATTGGAGATCAGTTCCCAGCAACACAggTTTGCTTAGATGCAGTAAAAGCTGCAGGCTTAGATGGACAAACTACCTTAGGCCTGGTATCAAACGAGGCAACTTCACCGATCATGAGGAGAAGATGATTATCCACCTCCAAGCTCTTTTGGGCAATAGATGGGCTGCCATAGCTTCCTATCTTCCGCAGAGGACAGACAATGACATAAAGAATTACTGGAATACCCAtctgaagaagaagctgaaaaaGGATCAATCAGGGAGCTGTGAGGGTAATGAACAAGACGGATACTCGTGTTCACAGCTAAAGGGTCAGTGGGAAAGAAGGCTTCAAACTGATATCCATATGGCCAAACAAGCCTTGTGTGAGGCACTCTCCCTTGATAAGCCTTCAACCCATTTCCCAATTGACAAAAATACTTTATCTCttgagaataataaaattaagccAAACCAGCAAGGAATAGCTTCCGGTACTTATGCATCGAGCACCGAGAACATATCCCGTTTGCTCGAGAATTGGATGGCGAAAGCCCCAAAGTACGTTGACACAACAAATTCAGGGacattttctttgttcagCAATCCCAACGACGTCGTCAACATGGTTACTACTACCACTAGAGGAGCTAGTTCAAGTTGCAGTGATGGTGCACAGAGTGCCCCAGATGGACTTGATTCACTGCTGAGCTTCAACTCTGATGGCTCTCAATCTGCTGACGATAACACCAATTTGACAACGGAGATTGGGTTTTTCCAAGATGAAAGCAAGCCAATTTTGGAACAAGCGGGACCAGTCCCTTTCACGTTCCTGGAGAAGTGGTTATTCGATGATGCCGCAGCTCATGGCCATGAAGATCTAATCAACATGTCACTCAACGAGACTACATCACCCTTGTTTTA 1010 0.4327 MMGRQPCCDNVGVKKGPWTPEEDIILVSYIQERGPGNWRSVPSNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKDQSGSCEGNEQDGYSCSQLKGQWERRLQTDIHMAKQALCEALSLDKPSTHFPIDKNTLSLENNKIKPNQQGIASGTYASSTENISRLLENWMAKAPKYVDTTNSGTFSLFSNPNDVVNMVTTTTRGASSSCSDGAQSAPDGLDSLLSFNSDGSQSADDNTNLTTEIGFFQDESKPILEQAGPVPFTFLEKWLFDDAAAHGHEDLINMSLNETTSPLF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01225 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Bva06g01225 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva06g01225 336 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Bva06g01225 336 SMART sant 67 115 IPR001005 -
Bva06g01225 336 SMART sant 14 64 IPR001005 -
Bva06g01225 336 Gene3D - 14 67 - -
Bva06g01225 336 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Bva06g01225 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva06g01225 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 322 - -
Bva06g01225 336 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Bva06g01225 336 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Bva06g01225 336 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 2 322 - -
Bva06g01225 336 CDD SANT 70 113 IPR001005 -
Bva06g01225 336 Gene3D - 69 133 - -
Bva06g01225 336 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01225 Bva-Chr6 9480695 9482573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01225 2 328 MYB Transcription Factor Family AT5G62470 51.075 3.00e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g01225 Myb_DNA-binding 4.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01225 K09422 - qsu:111987893 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01225 06 9480695 9482573 Bva06g01225 06 9480695 9482573 ECH