Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01209 atggcTCTTTTGTGGTTTCTGTTGGCGGGGTTTTTCTCGATGGGATCCTCTGCTTTTGCTTATGGTGGAGGTTGGATGGAGGCCCATGCAACCTTCTATGGGGGAGGTGATGCTTCTGGCACAATGGGTGGAGCTTGTGGTTATGGAAACCTGTATAGCCAGGGGTATGGAACTGACACAGCTGCTCTGAGCACGGCCTTGTTCAACAATGGTCTGAGCTGTGGTGCTTGTTTTGAAATCAAGTGTGTGAATGACCAAAAATGGTGCTTGCCGAGGTCCATAGTGGTCACCGCAACCAATTTTTGTCCACCAAACAATGCTCTTCCAAATAATGCAGGTGGCTGGTGCAACCCTCCCCTTCaacattttgatctttctcaGCCTGTCTTCCAGCAAATTGCTCAATACAGAGCTGGGATAGTACCCGTTACTTTTAGAAGAGTGGCATGCCGAAAGAGAGGAGGCATCAGATTCACCATCAACGGCCATTCTTACTTCAACCTAGTCCTGATCACCAACGTTGGTGGTGCTGGAGATGTTCATGCTGTTTCCGTCAAAGGGTCAAGAACTAATTGGCAACCCATGTCCAGGAACTGGGGTCAGAACTGGCAAAGTAACTCTTACCTCAATGGCCAAACCCTGTCTTTTAAGGTTACCACCAGCGATGGGCGCACTGTGATGTCTTACGATGTTGTCCCTGCTGGATGGTCCTTCGGCCAAACCTTCACTGGCAACCAATTCCCATA 746 0.4799 MALLWFLLAGFFSMGSSAFAYGGGWMEAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACFEIKCVNDQKWCLPRSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQQIAQYRAGIVPVTFRRVACRKRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTNWQPMSRNWGQNWQSNSYLNGQTLSFKVTTSDGRTVMSYDVVPAGWSFGQTFTGNQFP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01209 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Bva06g01209 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Bva06g01209 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Bva06g01209 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Bva06g01209 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Bva06g01209 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Bva06g01209 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Bva06g01209 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Bva06g01209 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Bva06g01209 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Bva06g01209 248 PANTHER EXPANSIN-A15 8 247 IPR002963 GO:0009664
Bva06g01209 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Bva06g01209 248 Gene3D - 155 247 IPR036749 -
Bva06g01209 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Bva06g01209 248 Gene3D - 12 151 IPR036908 -
Bva06g01209 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Bva06g01209 248 SMART dpbb_1 60 145 IPR007112 -
Bva06g01209 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Bva06g01209 248 PANTHER EXPANSIN 8 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01209 Bva-Chr6 9410780 9411787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01209 1 247 Expansin Gene Family AT2G03090 79.352 5.25e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01209 - K20628 ming:122065692 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01209 06 9410780 9411787 Bva05g00492 05 2409645 2411261 ECH
Bva03g02129 03 18757072 18760547 Bva06g01209 06 9410780 9411787 ECH
Bva08g01512 08 7960662 7962763 Bva06g01209 06 9410780 9411787 ECH
Bva11g00971 11 11601324 11603190 Bva06g01209 06 9410780 9411787 ECH
Bva06g01209 06 9410780 9411787 Bva06g01209 06 9410780 9411787 ECH