Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01199 ATGGAGACTGAGGAGcttaatttaaacaaagagTCTGCTGGTGTTGGAAATAATAGTAAGAGTGGTGATGGGTTCATTGATAGAAGCAAAGTGAGGATTTTGTTATGCGACAACGATGCTAAGAGTTCGGATGAGATTTGTACGCTTCTTTTGAGATGCTCTTATCAggTTACTTCAGTAAGGTCAGCAAGACAGGTAATTGATGCACTAAATGCAGAGGGACAAGATATAGACATCATACTAGCTGAAGTTGACCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACCTAACAAGGGACAATGAATTGCGTCGAATTCCTGTCATAATGATGTCGGCGCAAGATGAGGTATCAATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAACTTGTGGACGCACATGTGGCGAAGGAGGCGCATGCTTGGACTTGCAGAGAAGAACGTCATGAACTATGAATTTGATCTGGTTGCATCAGATCCTAGTGATGCTAACACGAACAGTACAACCTTGTTCACAGATGACACAGATGACAAGTCGAAGAGAAGCACAAATCCGGAGACAGTTGTGTCAATCCAACAGGAACACGAGTCTACAGTTGAggttgttgctgctgctgctattGTTGAGGGGCCTCCAGCTGTTCATGCATCGGAATATCGGCCTGATGTGCCTGCAATTAGCGATCGACGAACAGGATATTTTTCATCTGGTCCTAAAAAGAGTGAACTCAGGATTGGGGACTCCTCGGCCTTCTTTACTTATGTCAAAGCAACCACGCTGAAGAGCAACTCCCAAGAGATTGCTCATGTTGACAACAATACTGCCACAGATTTGAGAATAGAAGTTGTGCCTCGTGCAGATGCTCAACAGGTGGTTCATGAGGTACATATTCTTGAAAATGGAGATGCATATGAAAGCTATTCAAGAGATGACTTACCCAGCAGCAATGGTATACCGGATTCGTTTTCCATTGAGAGGTCTTGTACGCCACCTGCATCAACAGAAGTATCAGAACAAAAGCACTCCGGGGAAGAACATTTACATCAGGGTGTGGTCCTttctagaaaaggaaaaaatggttCTGAGCTTGAAGCATCTGGCTTGCCTGCTCATCATGCTTATCCATATTATATTTCTGGGGTTGTTAATCACGTTATGATGCCATCATCAGCACAATTGTATCAAAAGAACCTCCAGGACCTGCAGAATCATGCTAGTACAGCTATGATAGCACAATACAATCATCTACCCCAATGTCCTCCCAATGCAACCGGGATGACGTCCTTTCAATATTATCCAATGAGTATATGCTTACAACCTGGTCAGATGACTACACCTCATTCATGGTCATCATTTGGAAGTTCAAGTTCATCCGACGTGAAATTAAGTAAAGTTGACAGGAGAGAAGCGGCATTGATGAAGTTtagacagaaaagaaaagagcgTTGCTTTGATAAGAAAATCAGGTATGTCAACCGGAAACGACTCGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCGGAAAGTTTAATGGTGTAAATGTGGATCTCCATGGACAACCAGCGTCACTTGACTATGATGAAGATGACCAGGCAGCAAGAGATTCTTCACCTGAGGATGCTTG 1673 0.4148 METEELNLNKESAGVGNNSKSGDGFIDRSKVRILLCDNDAKSSDEICTLLLRCSYQVTSVRSARQVIDALNAEGQDIDIILAEVDLPMKKGMKMLKYLTRDNELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNVMNYEFDLVASDPSDANTNSTTLFTDDTDDKSKRSTNPETVVSIQQEHESTVEVVAAAAIVEGPPAVHASEYRPDVPAISDRRTGYFSSGPKKSELRIGDSSAFFTYVKATTLKSNSQEIAHVDNNTATDLRIEVVPRADAQQVVHEVHILENGDAYESYSRDDLPSSNGIPDSFSIERSCTPPASTEVSEQKHSGEEHLHQGVVLSRKGKNGSELEASGLPAHHAYPYYISGVVNHVMMPSSAQLYQKNLQDLQNHASTAMIAQYNHLPQCPPNATGMTSFQYYPMSICLQPGQMTTPHSWSSFGSSSSSDVKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVGKFNGVNVDLHGQPASLDYDEDDQAARDSSPEDA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01199 557 ProSiteProfiles CCT domain profile. 483 525 IPR010402 GO:0005515
Bva06g01199 557 MobiDBLite consensus disorder prediction 538 557 - -
Bva06g01199 557 MobiDBLite consensus disorder prediction 179 200 - -
Bva06g01199 557 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Bva06g01199 557 Gene3D - 31 234 - -
Bva06g01199 557 SUPERFAMILY CheY-like 27 157 IPR011006 -
Bva06g01199 557 MobiDBLite consensus disorder prediction 340 364 - -
Bva06g01199 557 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 543 IPR045279 GO:0009736
Bva06g01199 557 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Bva06g01199 557 SMART REC_2 31 146 IPR001789 GO:0000160
Bva06g01199 557 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 543 - -
Bva06g01199 557 Pfam CCT motif 483 523 IPR010402 GO:0005515
Bva06g01199 557 MobiDBLite consensus disorder prediction 534 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01199 Bva-Chr6 9351911 9357427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01199 20 556 Response Regulator Gene Family AT5G61380 49.760 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Bva06g01199 Response_reg 4.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01199 K12127 - gmx:100271889 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01199 06 9351911 9357427 Bva06g01199 06 9351911 9357427 ECH