Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01193 ATGGCGGGGGAATCGTCTTCgtcttcattttcatcttcacTTGTCTTGTCCGTGGATTGTCTCGACGACGTTGAAGACTACGTTTGGGAGAATCAAGCAGAAGTTCCATTGCCATCGGACGCATTTCATCACGTTTTTGAACTTGTGCTGAATGGAAATGAGGCATTTCGAGAGAACCGTATGGAAGAGCCAAGGTTGTTCCTTCTTCTGCTTACCCTTGAGAATATTGTTCAGGCAATCAACTTTTACACCCGAGCAAATAACATCAAAACTGGTGATCCTGTTATCCTCAGCAATCGAAGTGCAGCTTATATCAGGATTAGCCAATTCTTGAAGAACAGATCTCCATCGGCTTCAGAATATAAACCTTTGAGAGGGCTCGATCCTACAACGCATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTAGCATCCGAAGTAATTCAGTAAAATCATACCTTTTAAAGGCCAATGCGCTTTTTTTGTTGGAGAAATATGGAAAGGCCCGGGATGTTATTCTTTCAGGCCTTCAGGTTGATCCATATAGTAATTCTCTTCGAGcttctcttaaaaatttggaaagaaCGTCAACTAGTTTGATGGGGACCAGTAAACATGGACATGCAGAGCGTACTGATGATTTTGATTGCATTCTTTGCCTGAAGTTACTGTATGAACCTGTTACAACACCTTGTGGACACTCTTTTTGCCGCTCATGTTTATTTCAGTCAATGGATCGTGGTAACAGATGCCCATTATGTCGGACAGTTCTTTTTATTAGTCCTAGAACGTGCTCCATCAGTGTGACATTGAACAACATTATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGCATGACAGTTTGGCCCACTTCGGTGTGGATTTGTTGCCACTTTTTGTCATGGATGTCGTCATTCCATGTCAAAAGTTTCCACTGCATATATTTGAACCTCGGTACAGACTTATGGTCAGAAGAATAATGGAAGGCAATCATCGCATGGGAATGGTGATAGTTGATTCTACAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACTGAGTGTGAGCCTCTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTCGCCGGAGGTTTCGCATGATCAGATCTTGGGATCAGGATGGATATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATACCATCAGAAGGGACAAGAGAGAGGGAAGATTTGCAGCAGTTGACATATAATGCAGCAGAATATGCTCGATCATGGATAAGAAGGGAGAAAGAAGCTGCTAGACAAGATCTAAGAAGATTTGAGAAACTCCAGTTTGTTGAAGCGATGATGCCCCCAACACGAGACCCCGAGCGCTTCAGTTTTTGGCTTGCTACGTTATCAAACCGGAAGCCTTCAGAAAGATTGGATCTTTTACGCATTAGAGATACCAAAGAGAGGATTAAACGTGGGCTGATATGTCTCCGAGGAGACGAACAACGCCGCCGGATTCAAACACGTTTCTTTGATCATCCCATTTTTCGCATCAACAGACGTTA 1568 0.4196 MAGESSSSSFSSSLVLSVDCLDDVEDYVWENQAEVPLPSDAFHHVFELVLNGNEAFRENRMEEAINFYTRANNIKTGDPVILSNRSAAYIRISQFLKNRSPSASEYKPLRGLDPTTHAELGLKDAEKLVSIRSNSVKSYLLKANALFLLEKYGKARDVILSGLQVDPYSNSLRASLKNLERTSTSLMGTSKHGHAERTDDFDCILCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLNNIIQKNFPEEYAERKQEHDSLAHFGVDLLPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNHRMGMVIVDSTTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRMIRSWDQDGYRVAEVEWIQDIIPSEGTREREDLQQLTYNAAEYARSWIRREKEAARQDLRRFEKLQFVEAMMPPTRDPERFSFWLATLSNRKPSERLDLLRIRDTKERIKRGLICLRGDEQRRRIQTRFFDHPIFRINRR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01193 507 ProSiteProfiles Lon N-terminal domain profile. 284 485 IPR003111 -
Bva06g01193 507 Pfam ATP-dependent protease La (LON) substrate-binding domain 287 483 IPR003111 -
Bva06g01193 507 Pfam Zinc finger, C3HC4 type (RING finger) 203 240 - -
Bva06g01193 507 Gene3D Tetratricopeptide repeat domain 44 182 IPR011990 GO:0005515
Bva06g01193 507 ProSiteProfiles Zinc finger RING-type profile. 203 241 IPR001841 -
Bva06g01193 507 SUPERFAMILY PUA domain-like 287 480 IPR015947 -
Bva06g01193 507 SMART ring_2 203 240 IPR001841 -
Bva06g01193 507 SMART lon_5 286 485 IPR003111 -
Bva06g01193 507 PANTHER RING FINGER PROTEIN 127 12 477 - -
Bva06g01193 507 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 12 477 - -
Bva06g01193 507 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Bva06g01193 507 SUPERFAMILY RING/U-box 198 265 - -
Bva06g01193 507 Gene3D - 285 387 IPR046336 -
Bva06g01193 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 282 IPR013083 -
Bva06g01193 507 SUPERFAMILY TPR-like 50 180 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01193 Bva-Chr6 9332295 9338157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01193 201 273 C3H Transcription Factor Family AT2G42030 34.667 1.44e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01193 - - jre:109013310 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01193 06 9332295 9338157 Bva06g01193 06 9332295 9338157 ECH